Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30314
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29063-1|AAA36576.1| 303|Homo sapiens protein ( Human hnRNP C2 ... 31 3.0
M16342-1|AAA52680.1| 290|Homo sapiens SNRPC protein. 31 3.0
X87767-1|CAA61039.1| 287|Homo sapiens immunoglobulin A Fc recep... 31 5.3
X54150-1|CAA38089.1| 287|Homo sapiens Fc alpha receptor protein. 31 5.3
EF064738-1|ABK41921.1| 287|Homo sapiens Fc fragment of IgA, rec... 31 5.3
D87861-1|BAA13479.1| 178|Homo sapiens CD89_L10 protein. 31 5.3
D87855-1|BAA13473.1| 275|Homo sapiens CD89_U11 protein. 31 5.3
DQ075339-1|AAZ76582.1| 287|Homo sapiens FCAR protein. 31 5.3
DQ075338-1|AAZ76581.1| 287|Homo sapiens FCAR protein. 31 5.3
DQ075337-1|AAZ76580.1| 287|Homo sapiens FCAR protein. 31 5.3
DQ075336-1|AAZ76579.1| 287|Homo sapiens FCAR protein. 31 5.3
DQ075335-1|AAZ76578.1| 287|Homo sapiens FCAR protein. 31 5.3
DQ075334-1|AAZ76577.1| 287|Homo sapiens FCAR protein. 31 5.3
BC027953-1|AAH27953.1| 287|Homo sapiens FCAR protein protein. 31 5.3
BC041130-1|AAH41130.1| 889|Homo sapiens FCH domain only 1 protein. 30 9.2
BC028021-1|AAH28021.1| 891|Homo sapiens FCHO1 protein protein. 30 9.2
AB006628-1|BAA22959.1| 906|Homo sapiens KIAA0290 protein. 30 9.2
>M29063-1|AAA36576.1| 303|Homo sapiens protein ( Human hnRNP C2
protein mRNA. ).
Length = 303
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 99 KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDA---EMRKMEEEMSKFRSELMNEKA 263
K G ++ +K D I E + I+++ D+ + KME+E SK E+ N+K+
Sbjct: 176 KSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKMEKEQSKQAVEMKNDKS 233
>M16342-1|AAA52680.1| 290|Homo sapiens SNRPC protein.
Length = 290
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 99 KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDA---EMRKMEEEMSKFRSELMNEKA 263
K G ++ +K D I E + I+++ D+ + KME+E SK E+ N+K+
Sbjct: 163 KSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKMEKEQSKQAVEMKNDKS 220
>X87767-1|CAA61039.1| 287|Homo sapiens immunoglobulin A Fc receptor
CD89 protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>X54150-1|CAA38089.1| 287|Homo sapiens Fc alpha receptor protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>EF064738-1|ABK41921.1| 287|Homo sapiens Fc fragment of IgA,
receptor protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>D87861-1|BAA13479.1| 178|Homo sapiens CD89_L10 protein.
Length = 178
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 77 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 115
>D87855-1|BAA13473.1| 275|Homo sapiens CD89_U11 protein.
Length = 275
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 174 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 212
>DQ075339-1|AAZ76582.1| 287|Homo sapiens FCAR protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>DQ075338-1|AAZ76581.1| 287|Homo sapiens FCAR protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>DQ075337-1|AAZ76580.1| 287|Homo sapiens FCAR protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>DQ075336-1|AAZ76579.1| 287|Homo sapiens FCAR protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>DQ075335-1|AAZ76578.1| 287|Homo sapiens FCAR protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>DQ075334-1|AAZ76577.1| 287|Homo sapiens FCAR protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>BC027953-1|AAH27953.1| 287|Homo sapiens FCAR protein protein.
Length = 287
Score = 30.7 bits (66), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 538 NSPGVIXVHRFVSDSPRVWRGPSNLLSTVLTTDLFGEYT 422
N G+ + + + SP +W PSN L V+T + +YT
Sbjct: 186 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYT 224
>BC041130-1|AAH41130.1| 889|Homo sapiens FCH domain only 1 protein.
Length = 889
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 542 LPQGEQILRAIKSFAVPGTVLLTRGKRPLPQLGHHGPGTFPIPEALEAGFIIRP 703
L + + LR K+F +PG R P + P + PE E GF +RP
Sbjct: 276 LQEAMKRLRGAKAFRLPGLSRREREPEPPAAVDFLEPDSGTCPEVDEEGFTVRP 329
>BC028021-1|AAH28021.1| 891|Homo sapiens FCHO1 protein protein.
Length = 891
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 542 LPQGEQILRAIKSFAVPGTVLLTRGKRPLPQLGHHGPGTFPIPEALEAGFIIRP 703
L + + LR K+F +PG R P + P + PE E GF +RP
Sbjct: 276 LQEAMKRLRGAKAFRLPGLSRREREPEPPAAVDFLEPDSGTCPEVDEEGFTVRP 329
>AB006628-1|BAA22959.1| 906|Homo sapiens KIAA0290 protein.
Length = 906
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 542 LPQGEQILRAIKSFAVPGTVLLTRGKRPLPQLGHHGPGTFPIPEALEAGFIIRP 703
L + + LR K+F +PG R P + P + PE E GF +RP
Sbjct: 293 LQEAMKRLRGAKAFRLPGLSRREREPEPPAAVDFLEPDSGTCPEVDEEGFTVRP 346
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,598,284
Number of Sequences: 237096
Number of extensions: 2252830
Number of successful extensions: 10233
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10226
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -