Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30314
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    26   0.30 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    26   0.30 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    26   0.30 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.6  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +3

Query: 522 ITPGEFCCPKGNKS*GPLSLSLF--PGRCC 605
           I PG   C  GNKS GP  L  F     CC
Sbjct: 30  IYPGTLWCGHGNKSSGPNELGRFKHTDACC 59


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +3

Query: 522 ITPGEFCCPKGNKS*GPLSLSLF--PGRCC 605
           I PG   C  GNKS GP  L  F     CC
Sbjct: 35  IYPGTLWCGHGNKSSGPNELGRFKHTDACC 64


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +3

Query: 522 ITPGEFCCPKGNKS*GPLSLSLF--PGRCC 605
           I PG   C  GNKS GP  L  F     CC
Sbjct: 35  IYPGTLWCGHGNKSSGPNELGRFKHTDACC 64


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 228 SKFRSELMNEKATISSRAQL 287
           S FRS L N K  ISS  +L
Sbjct: 42  SGFRSSLRNYKTLISSHDEL 61


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 124 LLRPLSAIFHVICRVEIVETKQTLKRSRVNDF 29
           L  PL+ I H  C   I  T+   + +R N+F
Sbjct: 287 LEEPLTTIQHNNCLTRIPSTRINKQHTRGNNF 318


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 581 FAVPGTVLLTRGKR 622
           F  PG +LL RGK+
Sbjct: 598 FGFPGRLLLPRGKK 611


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 581 FAVPGTVLLTRGKR 622
           F  PG +LL RGK+
Sbjct: 598 FGFPGRLLLPRGKK 611


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 409 FDVSQYTPRRDRLLRLSTTNYLVHAKHEGNL 501
           +D+S YT        +S  + LV A HE  L
Sbjct: 84  YDISNYTDVHPIFGTISDLDNLVSAAHEKGL 114


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 409 FDVSQYTPRRDRLLRLSTTNYLVHAKHEGNL 501
           +D+S YT        +S  + LV A HE  L
Sbjct: 84  YDISNYTDVHPIFGTISDLDNLVSAAHEKGL 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,431
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)