Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30314
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    29   3.0  
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6...    29   3.9  
At5g66180.1 68418.m08337 expressed protein                             28   6.9  
At2g15860.1 68415.m01818 expressed protein  and genefinder             28   6.9  
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    28   6.9  
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina...    28   6.9  
At5g03960.1 68418.m00376 calmodulin-binding family protein             27   9.1  
At2g45240.1 68415.m05632 methionyl aminopeptidase, putative / me...    27   9.1  
At1g67230.1 68414.m07652 expressed protein                             27   9.1  

>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 129 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF-RSELMNEKATISSRAQLAR 293
           IP++  D   +   F S+R   + +++ M++E +KF +      K  +  +AQL R
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKFWKQHPAIVKTELLIQAQLTR 313


>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
           HD-ZIP transcription factor 6 identical to
           homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
           ATHB-6) (SP:P46668) [Arabidopsis thaliana]
          Length = 311

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +3

Query: 147 DFSVIDTEFSSIRERFDAEMRKME---EEMSKFRSEL 248
           D+ V+ T++ S+R  FD+  R  E   +E+SK +++L
Sbjct: 122 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158


>At5g66180.1 68418.m08337 expressed protein
          Length = 325

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 513 TDSYQIPLVFGVDQVICCRQS*QPISSGSILADIKAKLGESC 388
           T +YQ  +++G+D       S   IS G  + D+ A  GESC
Sbjct: 79  TKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPGESC 120


>At2g15860.1 68415.m01818 expressed protein  and genefinder
          Length = 512

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 213 MEEEMSKFRSELMNEKATISSRAQLARRHLHSIVTADSLPS 335
           M+E+ S F   L +++ T  ++ Q   ++L  +V + S+PS
Sbjct: 471 MQEKASTFNDSLRSDQTTAITKIQEGLQYLSYVVISTSMPS 511


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 183 RERFDAEMRKMEEEMSKFRSELMNEKATISSRAQLARRHL 302
           +ER DAE+R++++E+   +    N+   + ++AQ  R  L
Sbjct: 321 KERSDAEIRQLKQELKLVKETHENQCLELEAKAQKTRDEL 360


>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1064

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 183 RERFDAEMRKMEEEMSKFRSELMNEKATISSRAQLARRHL 302
           +ER DAE+R++++E+   +    N+   + ++AQ  R  L
Sbjct: 321 KERSDAEIRQLKQELKLVKETHENQCLELEAKAQKTRDEL 360


>At5g03960.1 68418.m00376 calmodulin-binding family protein
          Length = 403

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
 Frame = +2

Query: 371 QDEGDGQDSP------SFALMSASILPEE 439
           QD GDGQDSP      SF+ +  SIL +E
Sbjct: 297 QDSGDGQDSPFSFPRRSFSRLEQSILEDE 325


>At2g45240.1 68415.m05632 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to SP|Q01662 Methionine aminopeptidase
           1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 398

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 570 PLSLSLFPGRCCLPVGNALCH 632
           PL+   FP  CC  V   +CH
Sbjct: 194 PLNYYFFPKSCCTSVNEVICH 214


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 183 RERFDAEMRKMEEEMSKFRSELMNEKATISSRAQLARRHLH 305
           RE F+ E  +++E  +K  +EL N    I+ + +   RH+H
Sbjct: 518 RESFEKEWEELDERKAKIGNELKN----ITDQKEKLERHIH 554


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,372
Number of Sequences: 28952
Number of extensions: 319270
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)