Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30311
         (494 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   1.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   6.1  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 169 LINTYGTTCSIITCS 213
           L NT+GT   I+TCS
Sbjct: 265 LFNTFGTILLIMTCS 279


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 325 LCEWFHTASK 296
           L EW+HT SK
Sbjct: 62  LLEWYHTLSK 71


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 161 EHMVSLVVVQEYRVKVW 111
           EH+ S++ +   +VK+W
Sbjct: 71  EHLASIIRLTPTQVKIW 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,225
Number of Sequences: 336
Number of extensions: 2490
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)