Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30311
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   1.6  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   2.7  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   6.3  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   6.3  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 179 VFIRGVEHMVSLVVVQEYRVKVWVGLCCLMNSWSSNA*DISYAIV 45
           +++  + H  ++ ++  Y     V LC L++SW  N    SYA+V
Sbjct: 286 LYMSTLPHSSTVAIMYVYSWTGTVSLCNLVSSWILNTKTHSYALV 330


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 308 VEPLAKTLRELTDMYNKICEKDDTLLPVLWAFPYFSEPYITNMLPEIKMH 457
           V PLA  +++L   Y +  + D+   P LW F     PY+ +++ E+ +H
Sbjct: 278 VTPLA--IKKLLQ-YLQNPKSDEGNSPFLWVFVLLIGPYLASVVKELYVH 324


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 377 TLLPVLWAF---PYFSEPYITNMLPEIKMHDY 463
           TLLP   A+   PY  + +   +LP+ KM DY
Sbjct: 542 TLLPASTAYTSSPYGGDSFYNYVLPKEKMDDY 573


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 31  WVYSKTIA*EISYALELQLFMRQ 99
           W YS   A +  Y L+LQLF+ +
Sbjct: 445 WAYSLVRAEDAGYLLDLQLFLNR 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,419
Number of Sequences: 5004
Number of extensions: 37646
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)