Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30311
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0429 - 10135695-10135769,10135872-10135972,10138416-101385...    30   0.89 
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254...    27   8.3  

>02_02_0429 -
           10135695-10135769,10135872-10135972,10138416-10138532,
           10138810-10139041,10142326-10142442,10142762-10142827
          Length = 235

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 36  ILKNNSIRNILCIGTPTVHEAAQTHPDFNSILLDYDK 146
           +LK + I+N++ +G  T +   QT   F+++ LDYDK
Sbjct: 126 VLKTSGIKNLVIVGVQTPNCIRQT--VFDAVALDYDK 160


>12_01_0329 +
           2545511-2546683,2546983-2546993,2547377-2547438,
           2547882-2548225
          Length = 529

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 422 YITNMLPEIKMHDYQVEYE 478
           Y TN   E+ +HDY+ EY+
Sbjct: 348 YHTNQKKELDLHDYEAEYD 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,424
Number of Sequences: 37544
Number of extensions: 247395
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)