Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30311
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9138| Best HMM Match : zf-DHHC (HMM E-Value=0.0056)                 33   0.17 
SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06)                  28   4.9  
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_9138| Best HMM Match : zf-DHHC (HMM E-Value=0.0056)
          Length = 276

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 242 KVL*ESRDGGICVVVDPPFGGRVEPLAKTLRELTDMY 352
           K L  + +  I +++DPPFGG VE L  TL+++  ++
Sbjct: 18  KFLENADEEEIVIIMDPPFGGLVEVLGATLQKIWKLW 54


>SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06)
          Length = 177

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 392 LWAFPYFSEPYITNMLPEIKMHDYQVEYENH 484
           LW+F YF   ++ + +P++K++      + H
Sbjct: 121 LWSFDYFRGEFVVSPVPDVKVYTINPATDKH 151


>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 286 GPSFWRPCGTTRKDTKGAHRYVQ*NM*ERRYLATC 390
           GP++W PCG   K  K   + +Q +  +  Y   C
Sbjct: 345 GPTYWYPCGACSKPVKCNQKGIQCDYCDAWYHTKC 379


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 309  TRPPKGGSTTTQIPPSLDS*RTFLVIFHH 223
            T PP GGS++T+  P L++ R  L+ F++
Sbjct: 930  TPPPPGGSSSTENSPVLETERGDLIEFYN 958


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 348 CTIKYVRKTIPCYLFYGRFHTSLSPT 425
           CTI+ +RK  PC+LF G+   S   T
Sbjct: 228 CTIEGLRKLKPCFLFDGKGTVSAGNT 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,930
Number of Sequences: 59808
Number of extensions: 296859
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)