Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30310
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   6.3  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    25   8.3  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 39  FKSKLTA**EEPNINCKHYLDLSTYFCLRSRLLHGS 146
           F  KL +  +E  + CKHY+  S Y CL   L  GS
Sbjct: 401 FAEKLISQSDESTL-CKHYVYASLYACLFCNLNEGS 435


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 475 LINCSIALLVEIYLCAYRLTVIELQR 398
           L+ CS+ALL+ I     RL  I LQR
Sbjct: 104 LLGCSLALLLNILYHKRRLEKIRLQR 129


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 254 LSSSLHRVQTIRTDLTKCYV*HP 186
           L   L  V++IR+DL KC   HP
Sbjct: 112 LKIKLKEVESIRSDLLKCMSEHP 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,698
Number of Sequences: 5004
Number of extensions: 48322
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)