Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30310
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)              30   2.2  
SB_21984| Best HMM Match : DUF624 (HMM E-Value=3)                      29   2.9  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   5.1  
SB_37932| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)
          Length = 374

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 414 SLNYNGYRLN*VFYAVIKHVSTVQELIYSRI 322
           SLN NGY  + V  A+I+HV T ++ +Y ++
Sbjct: 271 SLNENGYFYDPVERAIIRHVVTKRQQVYGKL 301


>SB_21984| Best HMM Match : DUF624 (HMM E-Value=3)
          Length = 221

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = -3

Query: 339 LIYSRIYRNNIISLLVLCNAGTISHSRHSFI 247
           +++++I+R+++I+LL++C  G I  S  S I
Sbjct: 107 VVFAKIFRHSVIALLIVCQLGDIWKSDFSQI 137


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 131  IVTR*YSLLKCYSRFRTT*DVKRNIWLNR---F*LSVHDVMTMKECLLCEMVPALHS 292
            +  R Y    C   F++  DV  +I  N      LSV + + ++ECL+ + VP  HS
Sbjct: 1003 VTKRPYKCQDCGYYFQSEDDVLNHIKRNHPDLIPLSVEEQVNLQECLVTKTVPMTHS 1059


>SB_37932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 306 LYYYDRFANRLVLAQWTHA*SQRKKLSLICSRCNSMTVNRYAHKY 440
           LY+YD+FA+  VL   TH+ +     S +C+ C ++    +A+++
Sbjct: 311 LYFYDKFASVSVLE--THSIADPLSNSRVCAMCLTLYCVLWAYRW 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,874,232
Number of Sequences: 59808
Number of extensions: 342418
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)