Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30310
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81083-5|CAB54248.1|  493|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    29   3.4  

>Z81083-5|CAB54248.1|  493|Caenorhabditis elegans Hypothetical
           protein F44F1.6a protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 384 SLICSRCNSMTVNRY-AHKYISTNKAIEQLINNNFTNVL*QISKLYTNSEVNVF 542
           +L CS CNS+T  +Y   +Y   +KA++  + +   N+   I +   N + N F
Sbjct: 253 NLDCSNCNSVTSEKYLLPEYSVYSKALDARVIHCTNNLTSDIEQYTFNPDTNAF 306


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 393 CSRCNSMTVNRYAHKYISTNKAIEQLINNNFTNVL*QISKLYTNSEVNVFTL 548
           C +C  + V+   HK I  N+ +   I  + T+ + ++ K Y NS  ++ +L
Sbjct: 256 CKQC--LEVDHLNHKIIDINELVINAIREDVTSTVDRVEKKYNNSVADMNSL 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,572
Number of Sequences: 27780
Number of extensions: 267940
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)