Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30310
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59250.1 68416.m06605 F-box family protein contains F-box dom...    29   3.1  
At4g27300.1 68417.m03917 S-locus protein kinase, putative simila...    27   9.6  

>At3g59250.1 68416.m06605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 425

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 333 YSRIYRNNIISLLVLCNAGTISHSRHSFIVITSCTDN*NRFNQMLRLT 190
           Y  +  N    L+ +CN   +  S +S  V+T C ++   FN +++LT
Sbjct: 243 YDALVGNATDFLMGICNVQILCLSANSLAVLTFCCESIPVFNNLIQLT 290


>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 815

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 363 KHVSTVQELIYSRIYRNNIISLLVLCNAGTI 271
           K  S+ QE+ YS   R+ I+S LVL N G +
Sbjct: 240 KFTSSAQEVNYSWTPRHRIVSRLVLNNTGKL 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,444
Number of Sequences: 28952
Number of extensions: 224071
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)