Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30309
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   0.84 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   0.84 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.8  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +1

Query: 211 ECRRCP-----TVIMACHFLIEQKTE---GSERKQQMAKEYRVKVEKELREICYDV 354
           +C++C       +     FL+E K E       K    K+YRVK E+E +++  +V
Sbjct: 75  DCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +1

Query: 211 ECRRCP-----TVIMACHFLIEQKTE---GSERKQQMAKEYRVKVEKELREICYDV 354
           +C++C       +     FL+E K E       K    K+YRVK E+E +++  +V
Sbjct: 75  DCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +1

Query: 259 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 438
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 439 YRY 447
           + Y
Sbjct: 500 FDY 502


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -2

Query: 226 GTYDILISN*KEVPLXVAXFDAGFRHFLHRGRHV 125
           G +D+ + + + V        A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,160
Number of Sequences: 438
Number of extensions: 4276
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)