Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30306
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 102 8e-23
02_04_0462 + 23131433-23132836 98 2e-21
03_01_0548 + 4099386-4099847,4100435-4101316 56 9e-09
03_01_0547 + 4093196-4093657,4094267-4095148 56 9e-09
03_01_0544 + 4082528-4082989,4083585-4084466 56 9e-09
03_01_0543 + 4076981-4077442,4078145-4079026 56 9e-09
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 38 0.002
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 33 0.042
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848... 27 3.7
11_05_0045 - 18577329-18578338,18578704-18578917 27 4.9
06_03_0620 - 22803769-22804867,22804959-22805311 27 4.9
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 27 4.9
11_01_0773 + 6461854-6461961,6462225-6462483,6462727-6462958,646... 26 6.4
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 26 6.4
06_01_1116 + 9197761-9199956 26 6.4
05_02_0123 + 6842791-6843077,6843204-6843225 26 6.4
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 26 6.4
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004 26 8.5
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144... 26 8.5
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139... 26 8.5
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 102 bits (244), Expect = 8e-23
Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 2/89 (2%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVG--HG 176
L+ VD +IP P+R+L+K FLMP+E V SI GRGTV+TGR+ +G +K G D EI+G
Sbjct: 249 LMDAVDEYIPDPVRQLDKSFLMPIEDVFSIQGRGTVVTGRVEQGTIKTGEDVEILGLTPS 308
Query: 177 KTMKTTVTGVEMFHKTLEEAQAGDQLELL 263
+KTTVTGVEMF K L+ +AGD + LL
Sbjct: 309 GPLKTTVTGVEMFKKILDHGEAGDNVGLL 337
Score = 31.5 bits (68), Expect = 0.17
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 260 LVRSIKRGQIKRGIVMGEPGTAKAH 334
L+R +KRG ++RG V+ +PGT K +
Sbjct: 337 LLRGLKRGDVQRGQVVCKPGTVKTY 361
>02_04_0462 + 23131433-23132836
Length = 467
Score = 97.9 bits (233), Expect = 2e-21
Identities = 47/87 (54%), Positives = 60/87 (68%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
L+ VD +IP P R+ + PFL+ VE V SI GRGTV TGR+ RG +K G +IVG +T
Sbjct: 260 LIDSVDNYIPVPQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTVKVGDTVDIVGIRET 319
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQLELL 263
TVTGVEMF KT+++A AGD + LL
Sbjct: 320 RNCTVTGVEMFQKTMDDAMAGDNVGLL 346
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 55.6 bits (128), Expect = 9e-09
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ GVLK G +V G +
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPS 271
Query: 183 -MKTTVTGVEMFHKTLEEAQAGDQL 254
+ T V VEM H+ L+EA GD +
Sbjct: 272 GLTTEVKSVEMHHEALQEALPGDNV 296
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 55.6 bits (128), Expect = 9e-09
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ GVLK G +V G +
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPS 271
Query: 183 -MKTTVTGVEMFHKTLEEAQAGDQL 254
+ T V VEM H+ L+EA GD +
Sbjct: 272 GLTTEVKSVEMHHEALQEALPGDNV 296
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 55.6 bits (128), Expect = 9e-09
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ GVLK G +V G +
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPS 271
Query: 183 -MKTTVTGVEMFHKTLEEAQAGDQL 254
+ T V VEM H+ L+EA GD +
Sbjct: 272 GLTTEVKSVEMHHEALQEALPGDNV 296
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 55.6 bits (128), Expect = 9e-09
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ GVLK G +V G +
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPS 271
Query: 183 -MKTTVTGVEMFHKTLEEAQAGDQL 254
+ T V VEM H+ L+EA GD +
Sbjct: 272 GLTTEVKSVEMHHEALQEALPGDNV 296
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 37.9 bits (84), Expect = 0.002
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTV-ITGRLYRGVLKKGTDCEIVGHGK 179
LLK +DT +P P R++ KP +P+ V S G V I G++ G + G+ ++ G+
Sbjct: 446 LLKAIDT-LPPPSRDVSKPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGE 504
Query: 180 TMKTTVTGVEMFHKTLEEAQAGDQLEL 260
V +E + A+AGD + +
Sbjct: 505 L--AVVKTIERNSSSCNLARAGDNVAI 529
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 33.5 bits (73), Expect = 0.042
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKG 149
LL + +P+P +LE PF M V + G ++TGR+ GV++ G
Sbjct: 248 LLDSILQHVPSPKADLEAPFQMLVSMMERDFYLGRILTGRVRSGVVRVG 296
>03_05_0939 -
28983091-28983747,28983805-28983913,28984245-28984801,
28985197-28985414,28985508-28985613,28986352-28986429
Length = 574
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 217 WNISTPVTVVFIVLP*PTISQSVPFFKTP 131
W I+T T+ FI + T+S SVP F P
Sbjct: 123 WTIATFSTIYFIGMAVLTLSASVPTFMPP 151
>11_05_0045 - 18577329-18578338,18578704-18578917
Length = 407
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 36 PIRELEKP-FLMPVESVHSIPGRGTVITGRLYRGVL 140
P+ +E+P F M S +IPG ITG+L +G L
Sbjct: 241 PVVPVERPIFYMASASQTTIPGTEHAITGQLRKGGL 276
>06_03_0620 - 22803769-22804867,22804959-22805311
Length = 483
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 171 HGKTMKTTVTGVEMFHKTLEEAQAGDQLELLCVPSKGD 284
+G MKTT ++ K L EA GD+++ VP D
Sbjct: 132 NGSFMKTTFPALKNIQKALNEAGVGDKVK-ATVPLNAD 168
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGK 179
+L + T IP P P + + P RG ++ R+ G +KKG + GK
Sbjct: 244 ILDAIVTKIPPPQNTAISPLRALIFDSYYDPYRGVIVYFRVVDGSIKKGDKICFMASGK 302
>11_01_0773 +
6461854-6461961,6462225-6462483,6462727-6462958,
6463070-6463220,6463334-6463408,6463607-6463669
Length = 295
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 27 IPTPIRELEKPFLMPVESVHSIPGR-GTVITGRLYRGVLKKGTD 155
IPTP EL FL + + S + G G +Y+G+LK GT+
Sbjct: 3 IPTP--ELSSQFLKEITNEFSDERKVGEGAFGIVYKGMLKDGTE 44
>09_02_0496 -
9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +2
Query: 14 SGHIHSNT----YPRARKTFPDAS*VCSLN 91
SGHIH N YP+ ++TF S C N
Sbjct: 730 SGHIHGNITVSGYPKKQETFSRVSGYCEQN 759
>06_01_1116 + 9197761-9199956
Length = 731
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 71 WHQERFFELSDRCWN 27
W Q ++F L D CWN
Sbjct: 244 WLQCQYFHLGDNCWN 258
>05_02_0123 + 6842791-6843077,6843204-6843225
Length = 102
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 221 NLGGSTSRRST*A-LVRSIKRGQIKRGIVMGEPGTAKA 331
+L G RR T A LVR ++R + G V G P TA A
Sbjct: 45 SLAGEGRRRRTAAQLVRELRRMEDGAGRVDGSPATATA 82
>04_04_0350 +
24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 333 WALAVPGSPMTIPRLICPLLMERTRAQVDLRLVLPPR 223
WA PG + RL+ P +R A L+ LPPR
Sbjct: 757 WATQFPGQSNLLRRLLSPSPSDRPSAVELLQNDLPPR 793
>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
Length = 681
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 208 KCSTKPWRK-HKPEINLSSCAFHQKGTNQTRYCHGRT 315
K S+K RK +K EI + S H+ +CHGRT
Sbjct: 410 KDSSKQGRKEYKSEIKVISRLRHRNLVQLIGWCHGRT 446
>08_01_0170 -
1440908-1441072,1441539-1441581,1442155-1442619,
1442714-1444149
Length = 702
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 208 KCSTKPWRK-HKPEINLSSCAFHQKGTNQTRYCHGRT 315
K S+K RK +K EI + S H+ +CHGRT
Sbjct: 413 KNSSKQGRKEYKSEIKVISRLRHRNLVQLIGWCHGRT 449
>08_01_0169 -
1396657-1396710,1396801-1396843,1397440-1397904,
1397999-1399395
Length = 652
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 208 KCSTKPWRK-HKPEINLSSCAFHQKGTNQTRYCHGRT 315
K S+K RK +K EI + S H+ +CHGRT
Sbjct: 400 KNSSKQGRKEYKSEIKVISRLRHRNLVQLIGWCHGRT 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,169,188
Number of Sequences: 37544
Number of extensions: 171744
Number of successful extensions: 500
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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