Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30306
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 54   3e-08
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             37   0.005
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             32   0.13 
SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011)           29   1.2  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   1.6  
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       28   2.2  
SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)                      26   6.6  
SB_9529| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   6.6  
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_29353| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)            26   8.8  
SB_13518| Best HMM Match : Ank (HMM E-Value=0)                         26   8.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 32/84 (38%), Positives = 46/84 (54%)
 Frame = +3

Query: 3   LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
           L + +D+ +P P R    P  +P++ V+ I G GTV  GR+  GVLK GT   +      
Sbjct: 87  LFEGLDSILP-PSRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT--VVTFSPSN 143

Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
           + T V  VEM H++L EA  GD +
Sbjct: 144 ITTEVKSVEMHHESLAEALPGDNV 167


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +3

Query: 36  PIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKTMKTTVTGVEMF 215
           P R      L  V+   SI G+GT++TG +  G +      EI     T K  V  ++MF
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKK--VKSMQMF 161

Query: 216 HKTLEEAQAGDQ 251
            K +++A  GD+
Sbjct: 162 KKPVDKASQGDR 173


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 51  EKPFLMPVESVHSIPGRGTVITGRLYRGVLK 143
           E+P    ++  +S+PG GTVI+G   +G+++
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIR 132


>SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011)
          Length = 343

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 195 VTGVEMFHKTLEEAQAGDQLELLCVPSKGD 284
           VTG+E  HK+LEEA+ G ++  + + S GD
Sbjct: 262 VTGIEANHKSLEEARKGMEV-CIKIESTGD 290


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 220  KPWRKHKPEINLSSCAFHQKGTNQTRYCHGRTGYC 324
            + +R   P++ L + +F Q   NQ R C  R G C
Sbjct: 2173 RDFRVEDPDLRLRAASFDQLTVNQVRRCGCRDGGC 2207


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGR 101
           LL+ +  F+  P RE E+ FL+ V  V   P R
Sbjct: 471 LLRNLVPFLSKPFREAEQTFLIRVAGVKKSPSR 503


>SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 21  TFIPT-PIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKG 149
           +FI T  +R L+  F  P ES+  +PGRG ++T     G+L+ G
Sbjct: 413 SFISTVKVRLLKSGFSGP-ESIGEVPGRG-ILTQEATAGLLRAG 454


>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 121 RPVMTVPRPGIE*TDSTGIRKGFSSSRIG 35
           +P M VP    E     GIRKGF S R G
Sbjct: 49  QPNMRVPEDLWETLHDLGIRKGFRSKRAG 77


>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1250

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 GTDCEIVGHGKTMKTTVTGVEMFHKTLEEAQAGDQLELLCVP 272
           GT+ ++  + +T + T  GV+ +H  L   + G+     CVP
Sbjct: 227 GTENQLTDYNRTRRMTTFGVDFYHHLLATDKQGE-----CVP 263


>SB_9529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 121 RPVMTVPRPGIE*TDSTGIRKGFSSSRIG 35
           +P M VP    E     GIRKGF S R G
Sbjct: 49  QPNMRVPEDLWETLHDLGIRKGFRSKRAG 77


>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 330 ALAVPGSPMTIPRLICPLLME-RTRAQVDLRLVLPPR 223
           A+ +PGS   + +LIC +L + +   ++ +R ++P R
Sbjct: 709 AMGMPGSETALEKLICRVLGDLQAEGKICIREIMPRR 745


>SB_29353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 72  VESVHSIPGR-GTVITGRLYRGVLKKGTDCEIVGHGKTMKTTVTGVEMFHKTLEEAQA 242
           VESV+  PGR   V+ G    G   KG+DC++    K+     + +E+      +A+A
Sbjct: 40  VESVY--PGRMKLVLVGSSVTGFAAKGSDCDMCLLKKSFSGYESKIEVLRNIERKAKA 95


>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
          Length = 1451

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21   TFIPTPIRELEKPFLMPVESVHSIPG 98
            T+ P P++  EKPF + ++S  +I G
Sbjct: 1044 TWAPLPLKSSEKPFKLKLDSSANIGG 1069


>SB_13518| Best HMM Match : Ank (HMM E-Value=0)
          Length = 402

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 206 NSGYGCFHCFTMTNNFTI 153
           N G+G  HC T  NN ++
Sbjct: 92  NQGFGLLHCATAANNLSL 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,621,557
Number of Sequences: 59808
Number of extensions: 195521
Number of successful extensions: 674
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)