Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30306
(334 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 87 3e-18
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 87 3e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 81 3e-16
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 81 3e-16
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 81 3e-16
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 57 4e-09
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 57 4e-09
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 57 4e-09
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 46 5e-06
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 46 5e-06
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 29 0.81
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 27 2.5
Z81039-4|CAB02776.1| 361|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z81527-12|CAB04277.2| 487|Caenorhabditis elegans Hypothetical p... 27 4.3
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 26 5.7
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 26 5.7
AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine re... 26 5.7
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z81054-1|CAB02884.1| 542|Caenorhabditis elegans Hypothetical pr... 26 7.5
AL023816-2|CAA19431.1| 355|Caenorhabditis elegans Hypothetical ... 26 7.5
Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical pr... 25 10.0
U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical pr... 25 10.0
AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistan... 25 10.0
AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistan... 25 10.0
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 87.0 bits (206), Expect = 3e-18
Identities = 43/94 (45%), Positives = 63/94 (67%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
L+ +D+ +P P R + F+MP+ S +I GRGTVI G L RGVLKKG EI G G+T
Sbjct: 222 LIDALDS-LPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQT 280
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQLELLCVPSKGD 284
++TT + +++F K+++E +AGD +LC KGD
Sbjct: 281 LQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGD 314
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 87.0 bits (206), Expect = 3e-18
Identities = 43/94 (45%), Positives = 63/94 (67%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
L+ +D+ +P P R + F+MP+ S +I GRGTVI G L RGVLKKG EI G G+T
Sbjct: 222 LIDALDS-LPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQT 280
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQLELLCVPSKGD 284
++TT + +++F K+++E +AGD +LC KGD
Sbjct: 281 LQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGD 314
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 80.6 bits (190), Expect = 3e-16
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVG---H 173
LL+ +D P R++ + + E V+SI GRGTVITG+L RG+LK+G EIVG
Sbjct: 233 LLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 292
Query: 174 GKTMKTTVTGVEMFHKTLEEAQAGDQLELL 263
G T+K+ ++G+E F KT+++A+ GDQL +L
Sbjct: 293 GTTVKSVISGLESFRKTVDQAEPGDQLGVL 322
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 80.6 bits (190), Expect = 3e-16
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVG---H 173
LL+ +D P R++ + + E V+SI GRGTVITG+L RG+LK+G EIVG
Sbjct: 234 LLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 293
Query: 174 GKTMKTTVTGVEMFHKTLEEAQAGDQLELL 263
G T+K+ ++G+E F KT+++A+ GDQL +L
Sbjct: 294 GTTVKSVISGLESFRKTVDQAEPGDQLGVL 323
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 80.6 bits (190), Expect = 3e-16
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVG---H 173
LL+ +D P R++ + + E V+SI GRGTVITG+L RG+LK+G EIVG
Sbjct: 234 LLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 293
Query: 174 GKTMKTTVTGVEMFHKTLEEAQAGDQLELL 263
G T+K+ ++G+E F KT+++A+ GDQL +L
Sbjct: 294 GTTVKSVISGLESFRKTVDQAEPGDQLGVL 323
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 56.8 bits (131), Expect = 4e-09
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D+ IP P R ++P +P++ V+ I G GTV GR+ G++K G T
Sbjct: 194 LLEALDSIIP-PQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVT 252
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
T V VEM H++L EA GD +
Sbjct: 253 --TEVKSVEMHHESLPEAVPGDNV 274
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 56.8 bits (131), Expect = 4e-09
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D+ IP P R ++P +P++ V+ I G GTV GR+ G++K G T
Sbjct: 228 LLEALDSIIP-PQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVT 286
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
T V VEM H++L EA GD +
Sbjct: 287 --TEVKSVEMHHESLPEAVPGDNV 308
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 56.8 bits (131), Expect = 4e-09
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D+ IP P R ++P +P++ V+ I G GTV GR+ G++K G T
Sbjct: 228 LLEALDSIIP-PQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVT 286
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
T V VEM H++L EA GD +
Sbjct: 287 --TEVKSVEMHHESLPEAVPGDNV 308
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 46.4 bits (105), Expect = 5e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 15 VDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKTMKTT 194
+++ I P R+ E FL+ ++ +I G+GTV+TG + RGVL+ T+ E + K
Sbjct: 187 IESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNE--KRR 244
Query: 195 VTGVEMFHKTLEEAQAGDQLELLCVPS 275
V +E + + + + AG + L PS
Sbjct: 245 VKTLETWKQRVGQVAAGARAAFLVAPS 271
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 46.4 bits (105), Expect = 5e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 15 VDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKTMKTT 194
+++ I P R+ E FL+ ++ +I G+GTV+TG + RGVL+ T+ E + K
Sbjct: 146 IESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNE--KRR 203
Query: 195 VTGVEMFHKTLEEAQAGDQLELLCVPS 275
V +E + + + + AG + L PS
Sbjct: 204 VKTLETWKQRVGQVAAGARAAFLVAPS 230
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 29.1 bits (62), Expect = 0.81
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = +3
Query: 27 IPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKTMKTTVTGV 206
+ T +REL P E+ S P T G RGV++ + + H +
Sbjct: 542 LKTKLRELNDPNFSIAETPLSNPSLHTTTIGLSVRGVIRMKDE---IDHRSDFDVVIENA 598
Query: 207 EMF--------HKTLEEAQAGDQLELLCVPSKGDKSNAVLSWANRV 320
EM K + + G +L+ L +G KSN + A+R+
Sbjct: 599 EMVDQEMKNTGKKAINMVEFGSRLKKLKSELEGWKSNITVGGAHRI 644
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 10 KKWTHSFQHLSESSKNLS*CQLSLFTQFLDE 102
K WTH HL+E S L C+ T DE
Sbjct: 225 KDWTHKICHLAEGSNQLKTCKCFEDTCVSDE 255
>Z81039-4|CAB02776.1| 361|Caenorhabditis elegans Hypothetical
protein C25D7.5 protein.
Length = 361
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 180 TMKTTVTGVEMFHKTLEEAQAGDQLELLCVP--SKGDKSNAVLSWANRVLLK 329
T KTT T V K ++ L++L +P S+G+ SN++ N VL++
Sbjct: 73 TPKTTTTTVTTTRKRQPVKKSNVVLQMLTIPSLSRGNYSNSLKLHTNSVLVR 124
>Z81527-12|CAB04277.2| 487|Caenorhabditis elegans Hypothetical
protein F35E12.10 protein.
Length = 487
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 60 FLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEI 164
F P ++ S+ G + G V+ KGTDC I
Sbjct: 23 FNCPANNITSVRQNGNIPEGATSSVVIPKGTDCTI 57
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 215 PQNLGGSTSRRST*ALVRSIKRGQI-----KRGIVMGEPGTAKA 331
P+ STSR S ++VRS RG + RG V G G +++
Sbjct: 79 PRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRS 122
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 169 PTISQSVPFFKTPLYKRPVMTVPRPGIE 86
P I + VP TP +RPV P P IE
Sbjct: 172 PYIERPVPARPTPYIERPVPARPAPYIE 199
>AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein60 protein.
Length = 300
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 249 DLRLVLPPRFCGTFQLRLRLFSLFYHDQQFHNQY 148
DLR + F GT L L L + F+ Q FHNQ+
Sbjct: 209 DLRFLRQSVFQGTVFL-LELVTYFFIPQYFHNQW 241
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 15 VDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKG 149
+D +P+ R+ P V +S GTVI G++ G ++KG
Sbjct: 325 IDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKG 367
>Z81054-1|CAB02884.1| 542|Caenorhabditis elegans Hypothetical
protein F01D4.2 protein.
Length = 542
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 133 PLYKRPVMTVPRPGIE*TDSTGIRKGFSSSRIGVGMNVSTS 11
PLY GIE T ST G S+I G ++STS
Sbjct: 156 PLYTCGFALFDHLGIETTISTDSHLGLEVSKIAHGASISTS 196
>AL023816-2|CAA19431.1| 355|Caenorhabditis elegans Hypothetical
protein T05G11.3 protein.
Length = 355
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 224 GFVEHFNSGYGCFHCFTMTNNFTIS 150
GF+ +FNS C+ + N FTIS
Sbjct: 287 GFIINFNSAIHFLLCYCLHNVFTIS 311
>Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical
protein F55B12.5 protein.
Length = 551
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 300 IPRLICPLLMERTRAQVDLRLVLPPRFCG 214
+PR++ P + +R R ++ R V P FCG
Sbjct: 471 VPRVLWPQVKKRLRFAMNRRGVKLPIFCG 499
>U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical
protein T10E9.4 protein.
Length = 649
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 220 KPWRKH-KPEINLSSCAFHQKGTNQTRYCH 306
KP KH K ++ L C +++ N+T CH
Sbjct: 224 KPDLKHVKVDLGLKLCHYNEDCGNETEICH 253
>AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 464
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 300 IPRLICPLLMERTRAQVDLRLVLPPRFCG 214
+PR++ P + +R R ++ R V P FCG
Sbjct: 384 VPRVLWPQVKKRLRFAMNRRGVKLPIFCG 412
>AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 573
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 300 IPRLICPLLMERTRAQVDLRLVLPPRFCG 214
+PR++ P + +R R ++ R V P FCG
Sbjct: 493 VPRVLWPQVKKRLRFAMNRRGVKLPIFCG 521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,821,622
Number of Sequences: 27780
Number of extensions: 150106
Number of successful extensions: 450
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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