Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30306
(334 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 103 3e-23
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 95 1e-20
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 53 5e-08
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 53 5e-08
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 53 5e-08
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 53 5e-08
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 37 0.004
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 32 0.083
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 32 0.083
At2g31060.1 68415.m03790 elongation factor family protein contai... 31 0.15
At5g13650.2 68418.m01585 elongation factor family protein contai... 30 0.33
At5g13650.1 68418.m01584 elongation factor family protein contai... 30 0.33
At4g07943.1 68417.m01271 hypothetical protein similar to At4g052... 30 0.33
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 29 1.0
At5g35010.1 68418.m04132 hypothetical protein similar to At3g243... 28 1.8
At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At5g57680.1 68418.m07209 expressed protein 27 3.1
At1g12560.1 68414.m01457 expansin, putative (EXP7) similar to ex... 27 3.1
At4g08950.1 68417.m01473 phosphate-responsive protein, putative ... 26 5.5
At5g35646.1 68418.m04256 hypothetical protein 26 7.2
At4g13750.1 68417.m02134 expressed protein 26 7.2
At3g58760.1 68416.m06549 ankyrin protein kinase, putative simila... 26 7.2
At3g54510.1 68416.m06032 early-responsive to dehydration protein... 26 7.2
At3g42740.1 68416.m04463 hypothetical protein similar to At3g243... 26 7.2
At2g02690.1 68415.m00208 hypothetical protein 26 7.2
At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic, p... 25 9.5
At3g18380.2 68416.m02338 expressed protein 25 9.5
At3g18380.1 68416.m02337 expressed protein 25 9.5
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 25 9.5
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 25 9.5
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 103 bits (247), Expect = 3e-23
Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVG---H 173
L+ VD +IP P+R L+KPFLMP+E V SI GRGTV TGR+ +GV+K G + EI+G
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREG 308
Query: 174 GKTMKTTVTGVEMFHKTLEEAQAGDQLELL 263
G +K+TVTGVEMF K L+ QAGD + LL
Sbjct: 309 GVPLKSTVTGVEMFKKILDNGQAGDNVGLL 338
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 260 LVRSIKRGQIKRGIVMGEPGTAKAH 334
L+R +KR I+RG+V+ +PG+ K +
Sbjct: 338 LLRGLKREDIQRGMVIAKPGSCKTY 362
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 95.1 bits (226), Expect = 1e-20
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
L+ VD +IP P R+ E PFL+ VE V SI GRGTV TGR+ RG +K G ++VG +T
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRET 328
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQLELL 263
TVTGVEMF K L+EA AGD + LL
Sbjct: 329 RSYTVTGVEMFQKILDEALAGDNVGLL 355
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 260 LVRSIKRGQIKRGIVMGEPGTAKAH 334
L+R I++ I+RG+V+ +PG+ H
Sbjct: 355 LLRGIQKADIQRGMVLAKPGSITPH 379
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 52.8 bits (121), Expect = 5e-08
Identities = 33/84 (39%), Positives = 46/84 (54%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ G++K G G T
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLT 274
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
T V VEM H++L EA GD +
Sbjct: 275 --TEVKSVEMHHESLLEALPGDNV 296
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 52.8 bits (121), Expect = 5e-08
Identities = 33/84 (39%), Positives = 46/84 (54%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ G++K G G T
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLT 274
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
T V VEM H++L EA GD +
Sbjct: 275 --TEVKSVEMHHESLLEALPGDNV 296
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 52.8 bits (121), Expect = 5e-08
Identities = 33/84 (39%), Positives = 46/84 (54%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ G++K G G T
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLT 274
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
T V VEM H++L EA GD +
Sbjct: 275 --TEVKSVEMHHESLLEALPGDNV 296
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 52.8 bits (121), Expect = 5e-08
Identities = 33/84 (39%), Positives = 46/84 (54%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKT 182
LL+ +D I P R +KP +P++ V+ I G GTV GR+ G++K G G T
Sbjct: 216 LLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLT 274
Query: 183 MKTTVTGVEMFHKTLEEAQAGDQL 254
T V VEM H++L EA GD +
Sbjct: 275 --TEVKSVEMHHESLLEALPGDNV 296
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 36.7 bits (81), Expect = 0.004
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPV-ESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGK 179
LL VD+ + +P R++ KP LMP+ ++V S G+L G ++ G+ ++ G
Sbjct: 450 LLDAVDS-VKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPSGD 508
Query: 180 TMKTTVTGVEMFHKTLEEAQAGDQLEL 260
+ T+ +E + A+AGD + L
Sbjct: 509 --QGTIRSLERDSQACTIARAGDNVAL 533
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 99 RGTVITG-RLYRGVLKKGTDCEIVGHGKTMKTTVTGVEMFHKTLEEAQAGDQLELLCVPS 275
R +I G +++ G+LK GT + G T + +E HK ++ A+ GD++ + V S
Sbjct: 515 RDPIILGVKVHDGILKIGTPICVPGREFTDIGRIASIENNHKPVDYAEKGDEVAIKIVAS 574
Query: 276 KGDK 287
++
Sbjct: 575 NREE 578
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 99 RGTVITG-RLYRGVLKKGTDCEIVGHGKTMKTTVTGVEMFHKTLEEAQAGDQLELLCVPS 275
R +I G +++ G+LK GT + G T + +E HK ++ A+ GD++ + V S
Sbjct: 1103 RDPIILGVKVHDGILKIGTPICVPGREFTDIGRIASIENNHKPVDYAEKGDEVAIKIVAS 1162
Query: 276 KGDK 287
++
Sbjct: 1163 NREE 1166
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKG 149
LL V + P L++PFLM V + G ++TGR+ GV++ G
Sbjct: 103 LLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTGRVTSGVVRVG 151
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEI 164
L + + +P P E + M ++ +G + GRL+ GVL+KG D +
Sbjct: 264 LFEAIIRCVPGPNIEKDGALQMLATNIEYDEHKGRIAIGRLHAGVLRKGMDVRV 317
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 3 LLKEVDTFIPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEI 164
L + + +P P E + M ++ +G + GRL+ GVL+KG D +
Sbjct: 263 LFEAIIRCVPGPNIEKDGALQMLATNIEYDEHKGRIAIGRLHAGVLRKGMDVRV 316
>At4g07943.1 68417.m01271 hypothetical protein similar to At4g05290,
At3g42740, At5g35010, At5g36840, At3g43390, At2g14770,
At2g05560, At4g08880, At1g34730
Length = 213
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 89 NSWTRNCHYRPFIQRCLEEG 148
N C YRPF +RCLE G
Sbjct: 52 NDINSECRYRPFFKRCLEAG 71
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 27 IPTPIRELEKPFLMPVESVHSIPGRGTVITGRLYRGVLKKGTDCEIVGHGKTMKTTVTGV 206
IP P+ KP + + P RG ++ R+ G +KKG + GK GV
Sbjct: 261 IPAPLDTAGKPLRALIFDSYYDPYRGVIVYFRVIDGKVKKGDRIFFMASGKDYFADEVGV 320
>At5g35010.1 68418.m04132 hypothetical protein similar to At3g24380,
At5g36840, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 230
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 110 HYRPFIQRCLEEG 148
HYRPF +RCL+ G
Sbjct: 76 HYRPFFKRCLQAG 88
>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 535
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 7 LKKWTHSFQHLSESSKNLS*CQLSLFTQFLDEELSLQA 120
L++W +++ S+ N+ L T+F+DE++SL+A
Sbjct: 408 LEEWRKE-TYVTSSTSNMRTSSLMTLTRFIDEQISLRA 444
>At5g57680.1 68418.m07209 expressed protein
Length = 127
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 234 AQAGDQLELLCVPSKGDKSNAVLSWANRVLLKP 332
++ G L+ + D+S VLSWA VL KP
Sbjct: 5 SEEGSNKILVAISLDRDESQNVLSWAINVLAKP 37
>At1g12560.1 68414.m01457 expansin, putative (EXP7) similar to
expansin GI:2828241 from [Brassica napus];
alpha-expansin gene family, PMID:11641069
Length = 262
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 209 FNSGYGCFHCFTMT 168
FN GYGC CF +T
Sbjct: 80 FNDGYGCGQCFQIT 93
>At4g08950.1 68417.m01473 phosphate-responsive protein, putative
(EXO) similar to phi-1 (phosphate-induced gene)
[Nicotiana tabacum] GI:3759184; contains Pfam profile
PF04674: Phosphate-induced protein 1 conserved region
Length = 314
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 13 KWTHSFQHLSESSKNLS*CQLSLFTQFLDEELSLQAVYTE 132
K T + L+ SKN S L+L Q +DE SL T+
Sbjct: 92 KTTEKYYKLATPSKNSSPLSLTLGKQIIDESCSLGKSLTD 131
>At5g35646.1 68418.m04256 hypothetical protein
Length = 230
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 89 NSWTRNCHYRPFIQRCLEEG 148
N YRPF +RCLE G
Sbjct: 69 NDINSESRYRPFFKRCLEVG 88
>At4g13750.1 68417.m02134 expressed protein
Length = 2137
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 237 VLPPRFCGTFQLRLRLFSLFY-HDQQFHNQYPSSRHL--CINGL**QFLVQE 91
V+PP C T + +R SL++ HD R L C N L QF VQ+
Sbjct: 55 VMPPTHCNTVEEIIRRLSLYFEHDLSGAKHIGIFRKLQTCENLLAEQFQVQD 106
>At3g58760.1 68416.m06549 ankyrin protein kinase, putative similar
to ankyrin-kinase [Medicago truncatula]
gi|18700701|gb|AAL78674
Length = 471
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 154 IVKLLVMVKQ*KQP*PELKCSTKPWRKHKPEI 249
+ KLLV+ K K+ P + C WR PE+
Sbjct: 308 VSKLLVVKKTVKKDRPVVTCLDSSWRYMAPEV 339
>At3g54510.1 68416.m06032 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 54 KPFLMPVESVHSIPGRGTVITGRLYRGVLK 143
K + P ++ IPG +V+TG L +LK
Sbjct: 286 KKWFPPAMAIEFIPGLSSVVTGYLPSAILK 315
>At3g42740.1 68416.m04463 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 230
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 113 YRPFIQRCLEEG 148
YRPF +RCLE G
Sbjct: 77 YRPFFKRCLEAG 88
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 212 HFNSGYGCFHCFTMTNNFTISTLLQD 135
H G+ C C M+N+F L++D
Sbjct: 439 HVEGGFSCQACNRMSNSFGYECLMED 464
>At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic,
putative strong similarity to triosephosphate isomerase,
cytosolic from Petunia hybrida [SP|P48495], from Coptis
japonica [SP|P21820]
Length = 254
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 219 KTLEEAQAGDQLELLCVPSKGDKSNAVLSWANRVL 323
+TLEE +AG ++++ +K ++ V +W+N V+
Sbjct: 130 ETLEEREAGSTMDVVAAQTKA-IADRVTNWSNVVI 163
>At3g18380.2 68416.m02338 expressed protein
Length = 349
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 27 IPTPIRELEKPFLMPVESVH---SIPGRGTVITGRLYRGVLKKGTD 155
+P +R + +P +P ++ H ++PG +G L GV++ G+D
Sbjct: 95 LPNQMRSVIQPLSVP-KTTHMTGNLPGMTPAPSGSLVPGVMRSGSD 139
>At3g18380.1 68416.m02337 expressed protein
Length = 348
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 27 IPTPIRELEKPFLMPVESVH---SIPGRGTVITGRLYRGVLKKGTD 155
+P +R + +P +P ++ H ++PG +G L GV++ G+D
Sbjct: 95 LPNQMRSVIQPLSVP-KTTHMTGNLPGMTPAPSGSLVPGVMRSGSD 139
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 120 RLYRGVLKKGTDCEIVGHGKTMKTTVTGVEMFHKTLEEAQAGDQLELLCV 269
R+Y GV+KKG V GK +K V M +E+ Q +++ V
Sbjct: 385 RVYEGVIKKGDFIINVNTGKRIKVPRL-VRMHSNDMEDIQEAHAGQIVAV 433
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 120 RLYRGVLKKGTDCEIVGHGKTMKTTVTGVEMFHKTLEEAQAGDQLELLCV 269
R+Y GV+KKG V GK +K V M +E+ Q +++ V
Sbjct: 385 RVYEGVIKKGDFIINVNTGKRIKVPRL-VRMHSNDMEDIQEAHAGQIVAV 433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,438,947
Number of Sequences: 28952
Number of extensions: 140643
Number of successful extensions: 471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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