Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30302
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    30   0.019
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   6.7  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   6.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.9  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 29.9 bits (64), Expect = 0.019
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 422 PDRIMNTYSVVPSPKVSDTVVEPYNATLSFIN*LKTQTKPTVSTTRLSTISAFRTLKLST 601
           P  +++T +  PSP +S+   E   A  +      T   PT STT  +T++   T K ST
Sbjct: 124 PSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFTTKPST 183

Query: 602 PTYGRP 619
               +P
Sbjct: 184 KPTNKP 189


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 656 VTPDMVSDTRWFKVARMWVWI 594
           V  +++ D  W   A MW+W+
Sbjct: 393 VFEELLLDADWSVNAGMWMWL 413


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 5    WEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 106
            W +  D  G     AYHGD  +  E I    ++A
Sbjct: 918  WIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 486 NRTTPHFHSSIS*KHRRNLLYRQRGSLRYLLSAR*NYPHPHTGDLEPP 629
           +++ P  +S    +H ++   RQ  + R   + R  Y  P T   EPP
Sbjct: 196 SKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEPP 243


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 284 DSVLDVVRKEAESCDCLQGF 343
           D V    RK AE C  LQGF
Sbjct: 233 DVVASNSRKTAEMCYKLQGF 252


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 165 PWCRAPSRRGWRGARTCP 112
           P C  P  R  R  +TCP
Sbjct: 92  PTCDEPVHRPGRCCKTCP 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,551
Number of Sequences: 336
Number of extensions: 3074
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)