Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30302
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.84 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 281 VDSVLDVVRKEAESCDCLQG 340
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 242  VAGAGLSEDEVVRTEDLSERSRADR-VHGAGLQVDED 135
            ++ AG  +++  R     +RS  +R VH  G Q D D
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 127 GTYLSAGGFIVVY 89
           GT+L +GGF +VY
Sbjct: 70  GTFLGSGGFGIVY 82


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 656 VTPDMVSDTRWFKVARMWVWI 594
           V  +++ D  W   A MW+W+
Sbjct: 397 VFDELLLDADWSVNAGMWMWL 417


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 600 HPHTGDLEPPGVA 638
           HP TGDL P  V+
Sbjct: 103 HPLTGDLSPAAVS 115


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 74  LERINVYYNEASGGQVRAPRHPRRL 148
           L R+N    +  GGQ++  +H +RL
Sbjct: 266 LIRMNKLCIQTIGGQIKPRKHEQRL 290


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 630 QVVQGRPYVGVDSFSVRKADIVE 562
           QV+ G P   V+    R AD ++
Sbjct: 583 QVISGNPVASVNMVGERAADFIK 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,970
Number of Sequences: 438
Number of extensions: 3551
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)