Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30299
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    29   0.65 
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   4.6  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    26   6.1  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  

>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 80  IRNVIRRRCLFSVRYFRPYQNSCNLS 157
           +R  IR+ C + +RY RPY +S   S
Sbjct: 412 LRTNIRKECTYDIRYKRPYVSSLKYS 437


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 534 GKLHACSDFKNIYAVDEVYYVDEIKDVLKSLM 629
           G  ++ SD+ ++Y VDE+   + +++ +K L+
Sbjct: 308 GTYYSISDYTDVYGVDELQLFESLENCIKPLV 339


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 602 LINIIDFINCIYVFEVTTGMEFAHPDFILLRSLGTKR*DLPVLTSRAK*QPGSLTPQT 429
           L+ I++  NC   +E      F  P+FI   S+   + D  +    A    GS +P T
Sbjct: 189 LVPIVNGENCFNFYETQMETNFLSPEFIKKPSMVDHKRDSEINAVTAVSADGSFSPLT 246


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 523 KSGWANSMPVVTSKTYMQLMKSIMLM 600
           +  W+N++P +T   YM L+  + L+
Sbjct: 331 EENWSNTLPQITGYDYMSLVSYVHLL 356


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 154 VLYPHHSFITY*YFFKPFKDKIAFHYIIEHGSDVSMGPGTLEVPLSLF 297
           +L P+   +   +F+K F D+I F + I    ++S G   LE   SLF
Sbjct: 117 LLIPNDGRVNIKFFYKDFVDRIPFRF-IPSNFNISFGK-HLEQAKSLF 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,202
Number of Sequences: 5004
Number of extensions: 68233
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)