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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30299
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698...    77   2e-14
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    30   2.1  
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590...    30   2.1  
05_07_0208 + 28412736-28415348                                         29   2.7  
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    28   8.4  
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630...    28   8.4  
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    28   8.4  

>02_02_0120 +
           6984482-6984643,6984748-6984797,6984936-6984996,
           6985574-6985669,6985754-6985903,6986208-6986339,
           6986641-6986768,6987285-6987327,6987935-6988018,
           6989049-6989090,6989264-6989334,6989621-6989674,
           6989789-6989894,6990038-6990106,6990824-6990967,
           6992038-6992113,6992295-6992353
          Length = 508

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 9/87 (10%)
 Frame = +1

Query: 277 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 429
           EVP+ L A NR RL   L+     SG+    +V+LQGGE+   Y TD   +FRQE+YF +
Sbjct: 19  EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78

Query: 430 VCGVREPGCYFALDVSTGKSYLFVPRL 510
           + GVREPG Y A+D+ +G+S LF PRL
Sbjct: 79  LFGVREPGFYGAIDIVSGQSILFSPRL 105



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +3

Query: 510 PEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPE---TLA*HCLGPNTDSGL 680
           P +Y VWMG++   S FK+ Y VD V+YVDEI  VL+    +    L     G NTDSG 
Sbjct: 106 PADYAVWMGEIKPLSYFKDRYKVDMVFYVDEITQVLQDRFSDHGKPLLFVLYGKNTDSGN 165

Query: 681 TAR*AIFNG 707
            ++ A F G
Sbjct: 166 YSKPASFEG 174


>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +1

Query: 307 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGK 486
           R++L   L    + ++   E     D  V Y FRQ   + ++ G  +PG    L   TG 
Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEETGL 181

Query: 487 SYLFVP 504
             +F+P
Sbjct: 182 C-MFMP 186


>08_01_0007 -
           57681-57728,58260-58336,58418-58464,58808-58908,
           59016-59108,59418-59540,59637-59755,60154-60510,
           60888-61011
          Length = 362

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 612 HLLSHQHNRLHQLHICF*SHYRHGVCPSRLHTP 514
           H  +H HN  H +H     ++ H   P   HTP
Sbjct: 49  HNHNHNHNHNHNIHNSHNHNHNHNAAPHPCHTP 81


>05_07_0208 + 28412736-28415348
          Length = 870

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 671 VCVWAQTMSGQCFRHQTFEYIFY 603
           V  W+  ++G CF H++FE ++Y
Sbjct: 465 VVSWSSMIAGFCFNHRSFEALYY 487


>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 196 FKPFKDKIAFHYIIEHGSDVSMGPGTLEVPLSLFATNRRRLANK 327
           F+  KD +  HY+   G D+  G    EVP+SL  T  R L ++
Sbjct: 99  FREGKD-LPLHYVAA-GQDLEAGDVAFEVPMSLVVTLERVLGDE 140


>07_03_0755 -
           21261855-21261945,21262277-21262323,21262819-21263014,
           21263239-21263340,21263602-21263678,21264037-21264236,
           21264324-21264681,21265245-21265301,21265434-21266192,
           21266287-21266468,21266651-21266813
          Length = 743

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +1

Query: 283 PLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYF 462
           PL   A  +   +     G+I VL GG+ V  +DT   Y  R++ + T      + G   
Sbjct: 472 PLKSMAVGKSYASTVALDGKIFVLGGGDGVCWFDTVDCYDRRRDDWTTCPSFTHDKGSLA 531

Query: 463 ALDVSTGKSYLF 498
           A+  + GK Y +
Sbjct: 532 AVSFN-GKIYAY 542


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 582 EVYYVDEIKDVLKSLMPETLA*HCLGPNT--DSGL 680
           +V Y+++I D+LK         +C GPNT  D+GL
Sbjct: 454 KVLYLEQIVDILKMDSESLSTKYCSGPNTAADAGL 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,727
Number of Sequences: 37544
Number of extensions: 421974
Number of successful extensions: 842
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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