Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30299
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 77 2e-14
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 30 2.1
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 30 2.1
05_07_0208 + 28412736-28415348 29 2.7
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 28 8.4
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 28 8.4
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 28 8.4
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 76.6 bits (180), Expect = 2e-14
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 9/87 (10%)
Frame = +1
Query: 277 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 429
EVP+ L A NR RL L+ SG+ +V+LQGGE+ Y TD +FRQE+YF +
Sbjct: 19 EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78
Query: 430 VCGVREPGCYFALDVSTGKSYLFVPRL 510
+ GVREPG Y A+D+ +G+S LF PRL
Sbjct: 79 LFGVREPGFYGAIDIVSGQSILFSPRL 105
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 510 PEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPE---TLA*HCLGPNTDSGL 680
P +Y VWMG++ S FK+ Y VD V+YVDEI VL+ + L G NTDSG
Sbjct: 106 PADYAVWMGEIKPLSYFKDRYKVDMVFYVDEITQVLQDRFSDHGKPLLFVLYGKNTDSGN 165
Query: 681 TAR*AIFNG 707
++ A F G
Sbjct: 166 YSKPASFEG 174
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 307 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGK 486
R++L L + ++ E D V Y FRQ + ++ G +PG L TG
Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEETGL 181
Query: 487 SYLFVP 504
+F+P
Sbjct: 182 C-MFMP 186
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 612 HLLSHQHNRLHQLHICF*SHYRHGVCPSRLHTP 514
H +H HN H +H ++ H P HTP
Sbjct: 49 HNHNHNHNHNHNIHNSHNHNHNHNAAPHPCHTP 81
>05_07_0208 + 28412736-28415348
Length = 870
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 671 VCVWAQTMSGQCFRHQTFEYIFY 603
V W+ ++G CF H++FE ++Y
Sbjct: 465 VVSWSSMIAGFCFNHRSFEALYY 487
>12_01_0819 +
7545656-7546006,7546087-7546162,7547196-7547401,
7547498-7547584,7547673-7547765,7548172-7548326,
7548470-7548554,7548632-7548718,7548801-7548920,
7549707-7549808,7549903-7550070
Length = 509
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 196 FKPFKDKIAFHYIIEHGSDVSMGPGTLEVPLSLFATNRRRLANK 327
F+ KD + HY+ G D+ G EVP+SL T R L ++
Sbjct: 99 FREGKD-LPLHYVAA-GQDLEAGDVAFEVPMSLVVTLERVLGDE 140
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 283 PLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYF 462
PL A + + G+I VL GG+ V +DT Y R++ + T + G
Sbjct: 472 PLKSMAVGKSYASTVALDGKIFVLGGGDGVCWFDTVDCYDRRRDDWTTCPSFTHDKGSLA 531
Query: 463 ALDVSTGKSYLF 498
A+ + GK Y +
Sbjct: 532 AVSFN-GKIYAY 542
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 582 EVYYVDEIKDVLKSLMPETLA*HCLGPNT--DSGL 680
+V Y+++I D+LK +C GPNT D+GL
Sbjct: 454 KVLYLEQIVDILKMDSESLSTKYCSGPNTAADAGL 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,727
Number of Sequences: 37544
Number of extensions: 421974
Number of successful extensions: 842
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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