BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30299 (707 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 77 2e-14 12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 30 2.1 08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 30 2.1 05_07_0208 + 28412736-28415348 29 2.7 12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 28 8.4 07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 28 8.4 01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 28 8.4 >02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996, 6985574-6985669,6985754-6985903,6986208-6986339, 6986641-6986768,6987285-6987327,6987935-6988018, 6989049-6989090,6989264-6989334,6989621-6989674, 6989789-6989894,6990038-6990106,6990824-6990967, 6992038-6992113,6992295-6992353 Length = 508 Score = 76.6 bits (180), Expect = 2e-14 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 9/87 (10%) Frame = +1 Query: 277 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 429 EVP+ L A NR RL L+ SG+ +V+LQGGE+ Y TD +FRQE+YF + Sbjct: 19 EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78 Query: 430 VCGVREPGCYFALDVSTGKSYLFVPRL 510 + GVREPG Y A+D+ +G+S LF PRL Sbjct: 79 LFGVREPGFYGAIDIVSGQSILFSPRL 105 Score = 53.2 bits (122), Expect = 2e-07 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Frame = +3 Query: 510 PEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPE---TLA*HCLGPNTDSGL 680 P +Y VWMG++ S FK+ Y VD V+YVDEI VL+ + L G NTDSG Sbjct: 106 PADYAVWMGEIKPLSYFKDRYKVDMVFYVDEITQVLQDRFSDHGKPLLFVLYGKNTDSGN 165 Query: 681 TAR*AIFNG 707 ++ A F G Sbjct: 166 YSKPASFEG 174 >12_02_0786 + 23139854-23139901,23140054-23140122,23140531-23140544, 23140603-23140675,23140875-23140979,23141817-23142080, 23142159-23142251,23142381-23142587,23143155-23143258, 23143436-23143502,23143576-23143683,23143943-23144033, 23144123-23144193,23144421-23144549,23144659-23144766 Length = 516 Score = 29.9 bits (64), Expect = 2.1 Identities = 18/66 (27%), Positives = 29/66 (43%) Frame = +1 Query: 307 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGK 486 R++L L + ++ E D V Y FRQ + ++ G +PG L TG Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEETGL 181 Query: 487 SYLFVP 504 +F+P Sbjct: 182 C-MFMP 186 >08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908, 59016-59108,59418-59540,59637-59755,60154-60510, 60888-61011 Length = 362 Score = 29.9 bits (64), Expect = 2.1 Identities = 11/33 (33%), Positives = 15/33 (45%) Frame = -3 Query: 612 HLLSHQHNRLHQLHICF*SHYRHGVCPSRLHTP 514 H +H HN H +H ++ H P HTP Sbjct: 49 HNHNHNHNHNHNIHNSHNHNHNHNAAPHPCHTP 81 >05_07_0208 + 28412736-28415348 Length = 870 Score = 29.5 bits (63), Expect = 2.7 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -1 Query: 671 VCVWAQTMSGQCFRHQTFEYIFY 603 V W+ ++G CF H++FE ++Y Sbjct: 465 VVSWSSMIAGFCFNHRSFEALYY 487 >12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401, 7547498-7547584,7547673-7547765,7548172-7548326, 7548470-7548554,7548632-7548718,7548801-7548920, 7549707-7549808,7549903-7550070 Length = 509 Score = 27.9 bits (59), Expect = 8.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 196 FKPFKDKIAFHYIIEHGSDVSMGPGTLEVPLSLFATNRRRLANK 327 F+ KD + HY+ G D+ G EVP+SL T R L ++ Sbjct: 99 FREGKD-LPLHYVAA-GQDLEAGDVAFEVPMSLVVTLERVLGDE 140 >07_03_0755 - 21261855-21261945,21262277-21262323,21262819-21263014, 21263239-21263340,21263602-21263678,21264037-21264236, 21264324-21264681,21265245-21265301,21265434-21266192, 21266287-21266468,21266651-21266813 Length = 743 Score = 27.9 bits (59), Expect = 8.4 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +1 Query: 283 PLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYF 462 PL A + + G+I VL GG+ V +DT Y R++ + T + G Sbjct: 472 PLKSMAVGKSYASTVALDGKIFVLGGGDGVCWFDTVDCYDRRRDDWTTCPSFTHDKGSLA 531 Query: 463 ALDVSTGKSYLF 498 A+ + GK Y + Sbjct: 532 AVSFN-GKIYAY 542 >01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283, 8561377-8561642,8561967-8562111,8562411-8562530, 8562611-8562930,8564161-8564341,8564434-8564580, 8565186-8565497,8566303-8566450,8566592-8566765, 8567385-8567446,8567499-8567571,8567628-8567683, 8568370-8568645,8569541-8569588,8569870-8569991, 8570258-8570413,8571037-8571079,8572624-8572701, 8572972-8573070,8573168-8573209,8573302-8573304 Length = 1264 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 582 EVYYVDEIKDVLKSLMPETLA*HCLGPNT--DSGL 680 +V Y+++I D+LK +C GPNT D+GL Sbjct: 454 KVLYLEQIVDILKMDSESLSTKYCSGPNTAADAGL 488 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,613,727 Number of Sequences: 37544 Number of extensions: 421974 Number of successful extensions: 842 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 842 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1827423340 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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