Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30299
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32) 83 2e-16
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06) 32 0.40
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19) 30 2.1
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16) 29 3.7
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1) 28 8.5
SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32) 28 8.5
>SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)
Length = 198
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/79 (53%), Positives = 51/79 (64%), Gaps = 6/79 (7%)
Frame = +1
Query: 292 LFATNRRRLANKLKS------GQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPG 453
+FATNRRRL +LK G IVVL GGE Y TD VFRQE++F W GV E
Sbjct: 1 MFATNRRRLCERLKKNEKVPKGAIVVLLGGEQNTRYCTDTDVVFRQESFFHWTFGVLEAD 60
Query: 454 CYFALDVSTGKSYLFVPRL 510
C+ A++V TGKS LF+P+L
Sbjct: 61 CFGAVEVDTGKSILFIPKL 79
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/66 (42%), Positives = 34/66 (51%)
Frame = +3
Query: 510 PEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPETLA*HCLGPNTDSGLTAR 689
P+EY +WMGK+H +K Y VDEVY+V E G NTDSG T R
Sbjct: 80 PQEYAIWMGKIHPKEHYKEKYDVDEVYFVSE-----------------RGQNTDSGKTCR 122
Query: 690 *AIFNG 707
A F+G
Sbjct: 123 EAAFDG 128
>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
Length = 421
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 657 PDNVRPMFPASNF*VHLLSHQHNRLHQ-LHICF*SHYRHGVCPSRLHTPQESGHKEV 490
PD +R M +S+ + SH H + H+ SH+ H V PS HT +S H +V
Sbjct: 180 PDLIRVMPSSSHIIIKSWSHHHQVMSSPSHVIIKSHH-HQVTPSSSHTIIKSHHHQV 235
>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
Length = 951
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 462 CPRC*YRQVLPLCAQTPEEYEVWMGKLHAC----SDFKNIYAVDEVYYVDEI 605
CPR Y ++ C + + W+ H C S ++++ +EVYY+D +
Sbjct: 121 CPRG-YVEIRGSCYKFHMTKDTWINAFHECTRENSTLLSVHSEEEVYYIDRV 171
>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Frame = +1
Query: 355 QGGEDVNHYDTDVQYVFRQEAYFTWVC--GVREPGCYFALDVSTGKSYLFVPRLLRSMKS 528
Q + + HY V Y F + W+ G+ GC D+ G Y + R
Sbjct: 210 QNSDPLGHYG-GVIYAFNERLVRLWIPSQGLNNTGCILLNDLWGGGKYEQLETRCRINVK 268
Query: 529 GWANSMPVVTSKTYMQLMKS 588
W N PV ++ +KS
Sbjct: 269 IWVNQFPVPAFQSNWTRLKS 288
>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
Length = 501
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 354 QNHYLSTFEFIC*SSSVCCEQR*RHFKSARAHRHVAAMFDDIMKGNFIFEW-FEKISIRD 178
+N YLS EF+C S+ V AHR+ A+ + K NF W EK+ + D
Sbjct: 80 KNPYLSDVEFVCTSAGV-------QEVIIPAHRYALAVGSPVFKTNFEDRWSAEKLKLTD 132
Query: 177 KT 172
+
Sbjct: 133 SS 134
>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 325 KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFAL 468
+L +V++ G + TD+ Y FRQ F ++ G +EP L
Sbjct: 123 ELHDKHLVIIPGNPN-QFMSTDIPYPFRQNTDFLYLTGFQEPDAVLLL 169
>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 331 KSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWV 432
K IV + G+D N+++ V +FRQ WV
Sbjct: 146 KVSPIVATESGDDENNFEQFVSAIFRQHTTQLWV 179
>SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)
Length = 415
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 132 HIKTHVICLISPPQFYHVLIFFQTIQR*NCLSLYHRTWQRRVYGPWHS*SAVIFVRNKPT 311
H K CL +P F HV ++ + I C+ H +Y P S ++ +N P
Sbjct: 226 HQKHPYTCLYTPKTFLHVSVYTKNIPTRVCIHRKHS--YTCLYTPRTSLHVSVYTKNIPI 283
Query: 312 KI 317
++
Sbjct: 284 RV 285
>SB_3316| Best HMM Match : Keratin_B2 (HMM E-Value=0.32)
Length = 355
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 150 ICLISPPQFYHVLIFFQTIQR*NCLSLYHRTW 245
+C+I+P L+ TI+R C +YH+T+
Sbjct: 322 LCIITPSSHRSTLVTLCTIRRLPCHLMYHQTF 353
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,957,127
Number of Sequences: 59808
Number of extensions: 502727
Number of successful extensions: 1013
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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