Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30299
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    77   2e-14
Z68301-2|CAA92625.1|  366|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
 Frame = +1

Query: 271 TLEVPLSLFATNRRRLANKLKS----GQIVVLQGGEDVNHYDTDVQYV-FRQEAYFTWVC 435
           T +VP+ LF  NR RL + LKS      +V+LQGG + N Y+TD   + FRQE+YF W  
Sbjct: 9   TFKVPVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRYNTDAADLPFRQESYFFWTF 68

Query: 436 GVREPGCYFALDV-STGKSYLFVPRL 510
           GV E   Y A+DV S GK+ LF PRL
Sbjct: 69  GVNESEFYGAIDVRSGGKTTLFAPRL 94



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 519 YEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPETLA*HCL---GPNTDSG 677
           Y +W GK++    FK  YAVDEV + D+   + + L  E  A H       NTDSG
Sbjct: 98  YAIWDGKINNEQFFKEKYAVDEVVFNDKTTTIAEKL-KELSAKHVYLLRAENTDSG 152


>Z68301-2|CAA92625.1|  366|Caenorhabditis elegans Hypothetical
           protein W01B6.2 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 562 LKSLQAWSLPIQTSYSSGVWAQRGKTCLY 476
           L+ L++ +L +   +S G W++ G  CLY
Sbjct: 109 LRKLKSTNLVVNNGFSRGTWSRIGIQCLY 137


>U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical
           protein B0432.1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 620 FEYIFYLINIIDFINCIYVFEVTTGMEFAHPDFI 519
           F  IFY I I D ++CI +F +T      H D +
Sbjct: 60  FYRIFYYIGIADVLHCICLFWMTFQKYVIHGDIL 93


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 695 GLSGRQATVCVWAQTMSGQCFRHQTFEYIFYLINIIDFINCIYVFE 558
           G  G +A +C W  +         T  +IF ++ + D + C+Y  E
Sbjct: 395 GFEGNEAIICDWLNSA--------TIAHIFEVVGVKDIMMCVYTLE 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,553
Number of Sequences: 27780
Number of extensions: 389503
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)