Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30299
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolida...    76   3e-14
At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim...    30   1.7  
At3g58860.1 68416.m06560 F-box family protein contains F-box dom...    29   4.0  
At4g35880.1 68417.m05095 aspartyl protease family protein contai...    28   5.3  

>At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolidase,
           putative / imidodipeptidase, putative similar to
           SP|P12955 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro
           dipeptidase) (Proline dipeptidase) (Prolidase)
           (Imidodipeptidase) {Homo sapiens}; contains Pfam
           profiles PF00557: metallopeptidase family M24, PF05195:
           Aminopeptidase P, N-terminal domain
          Length = 333

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
 Frame = +1

Query: 280 VPLSLFATNRRRLANKLKS---------GQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWV 432
           +P+ L A NR++L   ++             V+LQGGE+ N Y TD   +FRQE+YF ++
Sbjct: 9   IPMELHAGNRKKLLESIRRQLSSSNRSLDGFVLLQGGEEKNRYCTDHTELFRQESYFAYL 68

Query: 433 CGVREPGCYFALDVSTGKSYLFVPRL 510
            GVREP  Y A+D+ +GKS LF+PRL
Sbjct: 69  FGVREPDFYGAIDIGSGKSILFIPRL 94



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 510 PEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMP---ETLA*HCLGPNTDSGL 680
           P++Y VW+G++   S FK  Y VD V+YVDEI  V         + L     G NTDS  
Sbjct: 95  PDDYAVWLGEIKPLSHFKETYMVDMVFYVDEIIQVFNEQFKGSGKPLLYLLHGLNTDSSN 154

Query: 681 TAR*AIFNG 707
            ++ A F G
Sbjct: 155 FSKPASFEG 163


>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
           similar to SP|P15034 Xaa-Pro aminopeptidase (EC
           3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
           (Aminoacylproline aminopeptidase) {Escherichia coli};
           contains Pfam profiles PF00557: metallopeptidase family
           M24, PF05195: Aminopeptidase P, N-terminal domain
          Length = 493

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/88 (22%), Positives = 38/88 (43%)
 Frame = +1

Query: 241 HGSDVSMGPGTLEVPLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAY 420
           H   ++ G  T  + +  +   R++L   L    + ++     V      V Y FRQ+A 
Sbjct: 39  HPHLMAEGEVTPGIRIEEYIGRRKKLVELLPENSLAIISSAP-VKMMTDVVPYTFRQDAD 97

Query: 421 FTWVCGVREPGCYFALDVSTGKSYLFVP 504
           + ++ G ++PG    L    G   +F+P
Sbjct: 98  YLYLTGCQQPGGVAVLSDERGLC-MFMP 124


>At3g58860.1 68416.m06560 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 457

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/92 (18%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = +1

Query: 340 QIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPG-CYFALDVSTGKSY-----LFV 501
           +++ LQG   +  +  +V+     +    W+C V + G  + AL +   + Y     + V
Sbjct: 79  RVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHLALFMDFEEEYSLPYEISV 138

Query: 502 PRLLRSMKSGWANSMPVVTSKTYMQLMKSIML 597
            + L  +K+G+   + +     ++ ++K+++L
Sbjct: 139 SKTLVELKTGYGVDLYLWDDDMFLPMLKTLVL 170


>At4g35880.1 68417.m05095 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 524

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 364 EDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTG 483
           EDV H  T+ +   R EAY T+ CG  + G +  +    G
Sbjct: 207 EDVMHLTTEDKNPERVEAYVTFGCGQVQSGSFLDIAAPNG 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,565
Number of Sequences: 28952
Number of extensions: 351255
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)