Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30298
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 174 8e-45
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 170 2e-43
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 80 2e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 4e-10
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.021
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.049
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.3
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 26 4.3
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.3
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 5.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.5
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 9.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 174 bits (424), Expect = 8e-45
Identities = 80/137 (58%), Positives = 96/137 (70%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP P P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 263 LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLL 322
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y P P + + N
Sbjct: 323 YRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCML 382
Query: 571 PTPPAIAEAWARLDHKF 621
+IAEAW+RLDHKF
Sbjct: 383 SNTTSIAEAWSRLDHKF 399
Score = 158 bits (384), Expect = 6e-40
Identities = 72/83 (86%), Positives = 76/83 (91%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
TTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LN
Sbjct: 194 TTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLN 253
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
VDL EFQTNLVPYPRIHFPLVTY
Sbjct: 254 VDLNEFQTNLVPYPRIHFPLVTY 276
Score = 33.5 bits (73), Expect = 0.028
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2
Query: 608 LTTSFDLMYAKRAFVHW 658
L FDLMY+KRAFVHW
Sbjct: 395 LDHKFDLMYSKRAFVHW 411
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 170 bits (413), Expect = 2e-43
Identities = 80/137 (58%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP P P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 259 LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLL 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI R P + + +
Sbjct: 319 YRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCML 378
Query: 571 PTPPAIAEAWARLDHKF 621
+IAEAW+RLDHKF
Sbjct: 379 SNTTSIAEAWSRLDHKF 395
Score = 154 bits (374), Expect = 1e-38
Identities = 69/83 (83%), Positives = 76/83 (91%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
TTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LN
Sbjct: 190 TTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
VDL EFQTNLVPYPRIHFPLVTY
Sbjct: 250 VDLAEFQTNLVPYPRIHFPLVTY 272
Score = 33.5 bits (73), Expect = 0.028
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2
Query: 608 LTTSFDLMYAKRAFVHW 658
L FDLMY+KRAFVHW
Sbjct: 391 LDHKFDLMYSKRAFVHW 407
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 80.2 bits (189), Expect = 2e-16
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +2
Query: 11 HTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVD 190
H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G LN D
Sbjct: 190 HQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSD 249
Query: 191 LTEFQTNLVPYPRIHFPLVTY 253
L + N+VP+PR+HF +V +
Sbjct: 250 LRKLAVNMVPFPRLHFFMVGF 270
Score = 66.5 bits (155), Expect = 3e-12
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I
Sbjct: 272 PLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIR 331
Query: 436 TIKTKRTIQFVDWCP 480
+++TK + FV+W P
Sbjct: 332 SVQTKNSAYFVEWIP 346
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.7 bits (138), Expect = 4e-10
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +2
Query: 26 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 205
++D ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL
Sbjct: 198 NADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSII 257
Query: 206 TNLVPYPRIHFPLVTY 253
+L+P PR HF L +Y
Sbjct: 258 ASLIPSPRCHFLLTSY 273
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 295 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 471
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 472 WCPTGFKVGINYRHP 516
W P +V ++ + P
Sbjct: 351 WGPASIQVALSKKSP 365
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 220 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 59
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.049
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 215 VPYPRIHFPLVTYGQSSLPRRPTMNSFPSPRSQTHASSPPTR 340
VP P P V+ +SS+P P N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.20
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 254 GQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TR 427
G S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 403 GNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TS 460
Query: 428 PSLPSKPSVLSNSSTGVQPVSRSVSTTAT 514
+ S P +N +T S T+T
Sbjct: 461 TPVTSTPLTTTNCTTSTSIPYTSTPVTST 489
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 299 SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGV 478
+P + T+ ++ + +TPV ++ CT TS P T P S ++ S++
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTS 583
Query: 479 QPVSRSVSTTAT 514
PV+ + TT+T
Sbjct: 584 TPVTTTNCTTST 595
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 307 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 432
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 435 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 292
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 314 THASSPPTRW*NATPVM-ASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVS 490
T ASS P N+T AS+ TS T PS + SVL SS P+S
Sbjct: 368 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS-SVLPTSSVSSTPLS 426
Query: 491 RSVSTTAT 514
+ STTAT
Sbjct: 427 SANSTTAT 434
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 314 THASSPPTRW*NATPVM-ASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVS 490
T ASS P N+T AS+ TS T PS + SVL SS P+S
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS-SVLPTSSVSSTPLS 540
Query: 491 RSVSTTAT 514
+ STTAT
Sbjct: 541 SANSTTAT 548
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 257 QSSLPRRPTMNSFPSPRSQTHASSPPTR 340
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 176 ALNVDLTEFQTNLVPYPRIHFPLVTYGQS-SLPRRPTMNSFPSPRSQTHASSPPTRW*NA 352
A +V++ E +TN +P HFP T + + +P S + T+ N
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTEEVAPASEEKPATGPAEESTSTQNVEQASTQNDNG 427
Query: 353 TPV 361
TP+
Sbjct: 428 TPI 430
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 561 RRHVEPWPSRLRAPRWV 511
+R+ + WPS++ P+WV
Sbjct: 153 QRYSDSWPSKITLPKWV 169
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 412 WVRRHHGTAYSKPCTCHDGG 353
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 214 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 41
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 431 SLPSKPSVLSNSSTGVQPVSRSVSTTATHRGARRRLGQGSTCRLHVVQH 577
SL + P+VL + P ++ S++A+ G+R + +C L++V H
Sbjct: 280 SLDNNPAVLDLNG----PPNQESSSSASSYGSRTQTPNARSCSLNIVFH 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,582
Number of Sequences: 5004
Number of extensions: 69766
Number of successful extensions: 289
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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