Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30298
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    28   0.070
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.16 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 574 TPPAIAEAWARLDHKFRPHVRQACFRALGT 663
           TPPAI ++   +D ++ P  +Q CF   G+
Sbjct: 136 TPPAIFKSSCEIDVRYFPFDQQTCFMKFGS 165


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 577 PPAIAEAWARLDHKFRPHVRQACFRALGT 663
           PPAI +++  +D ++ P   Q CF   G+
Sbjct: 137 PPAIYKSFCEIDVEYFPFDEQTCFMKFGS 165


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 577 PPAIAEAWARLDHKFRPHVRQACFRALGT 663
           PPA+ ++   +D +F P+  Q C   LG+
Sbjct: 145 PPAVYKSSCSIDVEFFPYDVQTCVLKLGS 173


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 549 EPWPSRLRAPRWVAVVDTDLETGWTPVD 466
           + W S +    W+ ++ TD    W P D
Sbjct: 83  DDWTSVMELHSWMTLMWTDSHLSWKPSD 110


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 577 PPAIAEAWARLDHKFRPHVRQACFRALGT 663
           PPAI ++   +D  + P  +Q C    G+
Sbjct: 143 PPAIYQSSCTIDVTYFPFDQQTCIMKFGS 171


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 577 PPAIAEAWARLDHKFRPHVRQACFRALGT 663
           PPAI ++   +D ++ P   Q C    G+
Sbjct: 141 PPAIYKSSCEIDVEYFPFDEQTCVMKFGS 169


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 643 TLGVHEVETCGQ 608
           T+GVH ++TCG+
Sbjct: 16  TIGVHILDTCGR 27


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 643 TLGVHEVETCGQ 608
           T+GVH ++TCG+
Sbjct: 106 TIGVHILDTCGR 117


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 577 PPAIAEAWARLDHKFRPHVRQACFRALGT 663
           PPAI ++   +D ++ P   Q C    G+
Sbjct: 145 PPAIYKSSCEIDVEYFPFDEQTCVLKFGS 173


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 441 QNQAYYPIRRLVSNRFQGRYQ 503
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 385 MLYRGDVVPKDVNAAIAT 438
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 189 TSPSSRLTWCLTPVSTSHWSRTAS 260
           TSP+S +  C++P++ S  S + S
Sbjct: 582 TSPNSAVRKCMSPINGSGASGSGS 605


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 577 PPAIAEAWARLDHKFRPHVRQACFRALGT 663
           PPAI ++   ++ ++ P   Q+C    G+
Sbjct: 150 PPAIYKSSCEINVEYFPFDEQSCIMKFGS 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,155
Number of Sequences: 438
Number of extensions: 5478
Number of successful extensions: 24
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)