Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30298
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 186 9e-48
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 186 9e-48
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 186 9e-48
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 185 3e-47
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 185 3e-47
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 175 2e-44
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 174 5e-44
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 87 8e-18
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 87 8e-18
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 87 1e-17
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 87 1e-17
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 85 3e-17
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 85 4e-17
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 85 4e-17
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 85 4e-17
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 85 4e-17
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 62 3e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 62 4e-10
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.17
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 2.1
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 29 2.1
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 29 2.1
At5g63940.1 68418.m08029 protein kinase family protein contains ... 29 2.8
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 29 3.7
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain... 28 4.9
At3g03950.2 68416.m00414 expressed protein contains Pfam profile... 28 4.9
At2g40070.1 68415.m04923 expressed protein 28 4.9
At1g68080.1 68414.m07777 expressed protein 28 4.9
At5g45840.1 68418.m05639 leucine-rich repeat transmembrane prote... 28 6.5
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 27 8.5
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 186 bits (454), Expect = 9e-48
Identities = 86/137 (62%), Positives = 99/137 (72%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINY+ P P +
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 571 PTPPAIAEAWARLDHKF 621
++AE ++R+DHKF
Sbjct: 379 SNSTSVAEVFSRIDHKF 395
Score = 145 bits (352), Expect = 2e-35
Identities = 63/83 (75%), Positives = 77/83 (92%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGALN
Sbjct: 190 STHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
VD+TEFQTNLVPYPRIHF L +Y
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSY 272
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 620 FDLMYAKRAFVHW 658
FDLMYAKRAFVHW
Sbjct: 395 FDLMYAKRAFVHW 407
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 186 bits (454), Expect = 9e-48
Identities = 86/137 (62%), Positives = 99/137 (72%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINY+ P P +
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 571 PTPPAIAEAWARLDHKF 621
++AE ++R+DHKF
Sbjct: 379 SNSTSVAEVFSRIDHKF 395
Score = 145 bits (351), Expect = 3e-35
Identities = 63/83 (75%), Positives = 76/83 (91%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGALN
Sbjct: 190 STHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
VD+TEFQTNLVPYPRIHF L +Y
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSY 272
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 620 FDLMYAKRAFVHW 658
FDLMYAKRAFVHW
Sbjct: 395 FDLMYAKRAFVHW 407
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 186 bits (454), Expect = 9e-48
Identities = 86/137 (62%), Positives = 99/137 (72%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINY+ P P +
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 571 PTPPAIAEAWARLDHKF 621
++AE ++R+DHKF
Sbjct: 379 SNSTSVAEVFSRIDHKF 395
Score = 145 bits (351), Expect = 3e-35
Identities = 63/83 (75%), Positives = 76/83 (91%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGALN
Sbjct: 190 STHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
VD+TEFQTNLVPYPRIHF L +Y
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSY 272
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 620 FDLMYAKRAFVHW 658
FDLMYAKRAFVHW
Sbjct: 395 FDLMYAKRAFVHW 407
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 185 bits (450), Expect = 3e-47
Identities = 86/137 (62%), Positives = 97/137 (70%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP PVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLM 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINY+ P P +
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 571 PTPPAIAEAWARLDHKF 621
A+AE ++R+DHKF
Sbjct: 379 SNNTAVAEVFSRIDHKF 395
Score = 153 bits (372), Expect = 8e-38
Identities = 93/224 (41%), Positives = 126/224 (56%), Gaps = 6/224 (2%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+N
Sbjct: 190 STHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAIN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTYGQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 364
VD+TEFQTNLVPYPRIHF L +Y + P P + P
Sbjct: 250 VDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDP-R 308
Query: 365 ASTWLAVCCTVVTS--YPRM*TRP--SLPSKPSV--LSNSSTGVQPVSRSVSTTATHRGA 526
++A CC + P+ ++ +K +V + TG + T G
Sbjct: 309 HGKYMA-CCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGD 367
Query: 527 RRRLGQGSTCRLHVVQHHRPSPKLGLALTTSFDLMYAKRAFVHW 658
++ Q + C ++ ++ ++ + FDLMYAKRAFVHW
Sbjct: 368 LAKV-QRAVC---MISNNTAVAEVFSRIDHKFDLMYAKRAFVHW 407
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 185 bits (450), Expect = 3e-47
Identities = 86/137 (62%), Positives = 97/137 (70%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP PVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLM 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINY+ P P +
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 571 PTPPAIAEAWARLDHKF 621
A+AE ++R+DHKF
Sbjct: 379 SNNTAVAEVFSRIDHKF 395
Score = 153 bits (372), Expect = 8e-38
Identities = 93/224 (41%), Positives = 126/224 (56%), Gaps = 6/224 (2%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+N
Sbjct: 190 STHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAIN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTYGQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 364
VD+TEFQTNLVPYPRIHF L +Y + P P + P
Sbjct: 250 VDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDP-R 308
Query: 365 ASTWLAVCCTVVTS--YPRM*TRP--SLPSKPSV--LSNSSTGVQPVSRSVSTTATHRGA 526
++A CC + P+ ++ +K +V + TG + T G
Sbjct: 309 HGKYMA-CCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGD 367
Query: 527 RRRLGQGSTCRLHVVQHHRPSPKLGLALTTSFDLMYAKRAFVHW 658
++ Q + C ++ ++ ++ + FDLMYAKRAFVHW
Sbjct: 368 LAKV-QRAVC---MISNNTAVAEVFSRIDHKFDLMYAKRAFVHW 407
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 175 bits (427), Expect = 2e-44
Identities = 81/137 (59%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP PVIS+ KAYHEQ SV EIT + FEP+N M KCDPRHGKYMACC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLM 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCPEATWPRFNVPSACC 570
YRGDVVPKDVN A+A IK KRTIQFVDWCPTGFK GINY+ P P +
Sbjct: 319 YRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMI 378
Query: 571 PTPPAIAEAWARLDHKF 621
A+AE ++R+DHKF
Sbjct: 379 SNNTAVAEVFSRIDHKF 395
Score = 149 bits (362), Expect = 1e-36
Identities = 89/224 (39%), Positives = 125/224 (55%), Gaps = 6/224 (2%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+TH+ LEH+D ++DNEAIYDICRR+LDIERPTY+NLNRLI Q +SS+T SLRFDGA+N
Sbjct: 190 STHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAIN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTYGQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 364
VD+TEFQTNLVPYPRIHF L +Y + F P T P P
Sbjct: 250 VDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDP-R 308
Query: 365 ASTWLAVCCTVVTS--YPRM*TR--PSLPSKPSV--LSNSSTGVQPVSRSVSTTATHRGA 526
++A CC + P+ ++ +K ++ + TG + + G
Sbjct: 309 HGKYMA-CCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGD 367
Query: 527 RRRLGQGSTCRLHVVQHHRPSPKLGLALTTSFDLMYAKRAFVHW 658
++ Q + C ++ ++ ++ + FDLMY+KRAFVHW
Sbjct: 368 LAKV-QRAVC---MISNNTAVAEVFSRIDHKFDLMYSKRAFVHW 407
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 174 bits (423), Expect = 5e-44
Identities = 79/106 (74%), Positives = 86/106 (81%), Gaps = 3/106 (2%)
Frame = +1
Query: 220 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 390
L PYP PVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++
Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318
Query: 391 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHPPWCP 528
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINY+ P P
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 364
Score = 145 bits (352), Expect = 2e-35
Identities = 63/83 (75%), Positives = 77/83 (92%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGALN
Sbjct: 190 STHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALN 249
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
VD+TEFQTNLVPYPRIHF L +Y
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSY 272
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 510 PPTVVPGGDLAKVQRAVCMLSNTT 581
PPTVVPGGDLAKVQRAVCM+SN+T
Sbjct: 359 PPTVVPGGDLAKVQRAVCMISNST 382
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/83 (44%), Positives = 56/83 (67%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T SLRF G LN
Sbjct: 189 SVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLN 248
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 249 SDLRKLAVNLIPFPRLHFFMVGF 271
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I
Sbjct: 273 PLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIL 332
Query: 436 TIKTKRTIQFVDWCPTGFKVGI 501
++ K + FV+W P K +
Sbjct: 333 NVQNKNSSYFVEWIPNNVKSSV 354
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/83 (44%), Positives = 56/83 (67%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T SLRF G LN
Sbjct: 189 SVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLN 248
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 249 SDLRKLAVNLIPFPRLHFFMVGF 271
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I
Sbjct: 273 PLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQIL 332
Query: 436 TIKTKRTIQFVDWCPTGFKVGI 501
I+ K + FV+W P K +
Sbjct: 333 NIQNKNSSYFVEWIPNNVKSSV 354
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + PT+ +LN LI +S +T LRF G LN
Sbjct: 188 SVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLN 247
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 248 SDLRKLAVNLIPFPRLHFFMVGF 270
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ +
Sbjct: 272 PLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMM 331
Query: 436 TIKTKRTIQFVDWCPTGFKVGI 501
I+ K + FV+W P K +
Sbjct: 332 NIQNKNSSYFVEWIPNNVKSSV 353
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + PT+ +LN LI +S +T LRF G LN
Sbjct: 188 SVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLN 247
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 248 SDLRKLAVNLIPFPRLHFFMVGF 270
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ +
Sbjct: 272 PLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMM 331
Query: 436 TIKTKRTIQFVDWCPTGFKVGI 501
++ K + FV+W P K +
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSSV 353
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN
Sbjct: 188 SVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLN 247
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 248 SDLRKLAVNLIPFPRLHFFMVGF 270
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ +
Sbjct: 272 PLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQML 331
Query: 436 TIKTKRTIQFVDWCPTGFK 492
++ K + FV+W P K
Sbjct: 332 NVQNKNSSYFVEWIPNNVK 350
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 85.0 bits (201), Expect = 4e-17
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN
Sbjct: 188 SVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLN 247
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 248 SDLRKLAVNLIPFPRLHFFMVGF 270
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ +
Sbjct: 272 PLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQML 331
Query: 436 TIKTKRTIQFVDWCPTGFK 492
++ K + FV+W P K
Sbjct: 332 NVQNKNSSYFVEWIPNNVK 350
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 85.0 bits (201), Expect = 4e-17
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN
Sbjct: 188 SVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLN 247
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 248 SDLRKLAVNLIPFPRLHFFMVGF 270
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ +
Sbjct: 272 PLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQML 331
Query: 436 TIKTKRTIQFVDWCPTGFK 492
++ K + FV+W P K
Sbjct: 332 NVQNKNSSYFVEWIPNNVK 350
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 85.0 bits (201), Expect = 4e-17
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN
Sbjct: 188 SVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLN 247
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 248 SDLRKLAVNLIPFPRLHFFMVGF 270
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ +
Sbjct: 272 PLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMI 331
Query: 436 TIKTKRTIQFVDWCPTGFK 492
++ K + FV+W P K
Sbjct: 332 NVQNKNSSYFVEWIPNNVK 350
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 85.0 bits (201), Expect = 4e-17
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALN 184
+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN
Sbjct: 188 SVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLN 247
Query: 185 VDLTEFQTNLVPYPRIHFPLVTY 253
DL + NL+P+PR+HF +V +
Sbjct: 248 SDLRKLAVNLIPFPRLHFFMVGF 270
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/82 (29%), Positives = 43/82 (52%)
Frame = +1
Query: 256 PVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA 435
P+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ +
Sbjct: 272 PLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMI 331
Query: 436 TIKTKRTIQFVDWCPTGFKVGI 501
++ K + FV+W P K +
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSSV 353
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +2
Query: 26 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 205
++DC ++DN A+ I L + PT+ N L+ ++S+ T +LR+ G +N DL
Sbjct: 198 NADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLL 257
Query: 206 TNLVPYPRIHFPLVTYGQSSLPRR 277
+L+P PR HF + Y ++ R+
Sbjct: 258 ASLIPTPRCHFLMTGYTPLTVERQ 281
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Frame = +1
Query: 211 LGALPPYP----LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH----- 363
L +L P P L TG+ + + + +V ++ + N MV R+
Sbjct: 257 LASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQ 316
Query: 364 GKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHP 516
KY++ + +G+V P V+ ++ I+ ++ + F+DW P +V ++ + P
Sbjct: 317 AKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSP 367
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +2
Query: 26 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 205
++DC ++DN A+ I L + PT+ N L+ ++S+ T +LR+ G +N DL
Sbjct: 198 NADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLL 257
Query: 206 TNLVPYPRIHFPLVTYGQSSLPRR 277
+L+P PR HF + Y ++ R+
Sbjct: 258 ASLIPTPRCHFLMTGYTPLTVERQ 281
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Frame = +1
Query: 211 LGALPPYP----LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH----- 363
L +L P P L TG+ + + + +V ++ + N MV R+
Sbjct: 257 LASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQ 316
Query: 364 GKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYRHP 516
KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P
Sbjct: 317 AKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSP 367
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 429 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDWP 253
GRV I Y D + + H H L TG+ HH+ G++ D D K+ + L D P
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK----DASDKKILVDMLFWAFDNP 114
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 356 PVMASTWLAVCCTVVTSYPRM*TRP---SLPSKPSVLSNSSTGVQPVSRSVSTTATHRGA 526
P+MA + T+V S P + SLPS P +SS +P+ +V T++T
Sbjct: 178 PMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEPIPPTVGTSST---K 234
Query: 527 RRRLGQGST 553
RRR G T
Sbjct: 235 RRRTTPGET 243
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Frame = +1
Query: 220 LPPYPLPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKCD-----PRHGKYMACC 384
LPPYPLPT V + K + + L V I + N + D P Y+A
Sbjct: 517 LPPYPLPTHEVAKKFNTPKEF-KDLQVGRIQMEFLKLDNALTLADAISDLPPVTNYVAND 575
Query: 385 MLYRGDVVPKDVNAAIATIKTKRTI 459
++ D PK ++K T+
Sbjct: 576 VMDYNDAAPKTEFENFISLKRSETL 600
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 145 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLP 240
L C RRR GP RV + LPPYP P
Sbjct: 97 LQRCIIARRRRDRVGPVRVEN---TLPPYPPP 125
>At5g63940.1 68418.m08029 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 705
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 594 FGDGRWCWT--TCRRHVEPWPSRLRAPRWVAVVDTDLETGWTPVDELDSTLGFDGSDGRV 421
+G+ R WT + ++ V W SRLR V+ D + + DE D + DG D +
Sbjct: 253 YGNNRKSWTKVSAKKAVLQWVSRLRGRHSETVIYLDRKRSDSGCDE-DCSSSIDGEDVSI 311
Query: 420 HILGYDV 400
G ++
Sbjct: 312 SRFGSEL 318
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 507 VVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 406
V DT+L TPVD ++ L G VH+ GY
Sbjct: 361 VTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 513
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 224 PRIHFPLVTYGQSSLPRRPT-MNSFPSPRSQTHASSPP 334
P + FP T+G LP +P M PSP HA PP
Sbjct: 323 PGVVFPTTTHG-LGLPEQPVYMIPSPSPSPVYHAPPPP 359
>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 424
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 119 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYGQSS--LPRRPTMNS 292
+RL+ TA L D +L D E N +P H P YG SS RRP MN+
Sbjct: 8 DRLVTSFPLLDTADLFQDLSLGSDANEVPMNFTKHPYGHAP---YGASSHGSERRPNMNA 64
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +2
Query: 275 RPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSV 454
+PT ++ S S T S+P T +A P ++T L+ T +S P +RP+LP ++
Sbjct: 255 KPTTSTARSAGSVTR-STPSTTTKSAGPSRSTTPLSRS-TARSSTPT--SRPTLPPSKTI 310
Query: 455 LSNSSTGVQPVSRSVSTTAT 514
+S+ +P++ + + T T
Sbjct: 311 SRSSTPTRRPIASASAATTT 330
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 468 DELDSTLGFDGSDGRVHILGYDVTTVQ 388
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At5g45840.1 68418.m05639 leucine-rich repeat transmembrane protein
kinase, putative and genscan+
Length = 668
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 197 EFQTNLVPYPRIHFPLVTYGQSSLPRR-PTMNSFPSPRSQTHASSPPTRW*NATPVMAST 373
E T + P FP +T + +P P + P P + T AS PP ++ +
Sbjct: 251 EIITIVFPRSSGSFPALTNAKKRIPPLIPPSSPPPLPTNNTIASDPPRKFEEKSKGFKDV 310
Query: 374 WLAV 385
WL V
Sbjct: 311 WLYV 314
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 133 SDETIQVGVGWALNVEITAADVIDGFIV-DHESTVRVLKGCVGGA 2
S T+ G WA +VE +++ FIV DH+ ++ L+GC A
Sbjct: 481 SHVTLVNGNKWASSVEQALGTLLNAFIVTDHKDSL-TLRGCANEA 524
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,492
Number of Sequences: 28952
Number of extensions: 410093
Number of successful extensions: 1545
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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