Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30296
         (509 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.2  
UniRef50_Q5CQQ4 Cluster: Possible 2 TPR domains at N-terminus; n...    32   6.6  
UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;...    32   8.7  
UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacter...    32   8.7  

>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
          Arabidopsis thaliana|Rep: Putative uncharacterized
          protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 14 MKNAVNCAS*CELQDTFEHRHFERTLR 94
          MKN   C + CELQ+   HR FER LR
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLR 27


>UniRef50_Q5CQQ4 Cluster: Possible 2 TPR domains at N-terminus; n=2;
           Cryptosporidium|Rep: Possible 2 TPR domains at
           N-terminus - Cryptosporidium parvum Iowa II
          Length = 1317

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -3

Query: 507 NVFVRTVVVVDIK*RLIQRQQQNNETKTTKI-HIHEXLYAHAKHNARAREVRRDYENFEI 331
           N+F + V+V   K  L +  + NNE    +I ++ +     A HN   + V  DY  FE 
Sbjct: 142 NIFDKAVIV--FKAALKRENESNNENSIKEIENLIKICEKKADHNNALKRVTVDYSRFEE 199

Query: 330 TIKHF*IRRRDELAKRDS 277
            ++   +    E AK +S
Sbjct: 200 ALRELELEELAENAKNNS 217


>UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 243

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 141 CSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 7
           C  P   +GPG  S    V +K  C+N SC+++Y+ + T F   P
Sbjct: 83  CEAPLVCNGPGKYSV---VPTKTDCNNDSCNNYYECEATWFLFVP 124


>UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacterium
           MLMS-1|Rep: Sensor protein - delta proteobacterium
           MLMS-1
          Length = 537

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 62  FEHRHFERTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 196
           F+HR  + ++R VE   GP+L EGR       H V+  A V R +
Sbjct: 212 FQHRRADGSIREVEVFAGPILLEGRSLLYSIVHDVSERARVEREL 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 416,546,337
Number of Sequences: 1657284
Number of extensions: 7277342
Number of successful extensions: 17530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17529
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)