Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30296
         (509 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   8.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   8.4  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -3

Query: 450 QQQNNETKTTKI---HIHEXLYAHAKHN 376
           QQQNN    T     H H   + HA+H+
Sbjct: 308 QQQNNNNAATNNQNHHHHAGHHIHAQHH 335


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 462 LIQRQQQNNETKTTKIHIHEXLYAHAKHNARARE 361
           L+ R    N    + IH+    Y  ++  ARARE
Sbjct: 131 LLHRPDTQNLDLPSFIHVFPDKYVDSQVFARARE 164


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 500 SFAPSSSSILNND*YNVNNR 441
           S +PSS++++ N+  N N+R
Sbjct: 331 SNSPSSTNLIQNEASNENSR 350


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 500 SFAPSSSSILNND*YNVNNR 441
           S +PSS++++ N+  N N+R
Sbjct: 120 SNSPSSTNLIQNEASNENSR 139


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 500 SFAPSSSSILNND*YNVNNR 441
           S +PSS++++ N+  N N+R
Sbjct: 120 SNSPSSTNLIQNEASNENSR 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,855
Number of Sequences: 336
Number of extensions: 1818
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)