Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30296
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.6  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   5.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 AHAKHNARAREVRRDYENFEITIKHF 316
           AH   N+RA     DY     T+K+F
Sbjct: 127 AHGTGNSRANTYNFDYPQVPYTVKNF 152


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 462  LIQRQQQNNETKTTKIHIHEXLYAHAKHNARARE 361
            ++Q+QQQ  + +  +    +      +H AR RE
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 330 LFQNFHNHVEPLW 368
           LF N HNH++ ++
Sbjct: 51  LFDNVHNHIQNIF 63


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 330 LFQNFHNHVEPLW 368
           LF N HNH++ ++
Sbjct: 34  LFDNVHNHIQNIF 46


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 99  TDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 7
           TDR +R+K     V C     A + + + DP
Sbjct: 74  TDRVIRAKLGKVGVHCMKTTQAVVVSLYEDP 104


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 334 NNNKTFLDPSERRASETRFVIVVF 263
           N+N T L P + R +E   V +VF
Sbjct: 20  NSNYTELLPIDMRFNEGHIVSIVF 43


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 1   GSRVDEERS*LRV 39
           GSR DEER  LR+
Sbjct: 295 GSRFDEERLTLRI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,503
Number of Sequences: 438
Number of extensions: 1944
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)