Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30295
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.29 
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    30   0.38 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    29   0.67 
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    29   0.88 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   2.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   3.6  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.7  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 221 TTQGIPTGTLCLPKYRPSRYPS*ANSP*ATTRTASLLCTG-TPSRTYSP*SCDRCSNTPR 397
           TT G+PT ++  P    S YPS  +S    +R +S L +   P+ T+   S       P 
Sbjct: 720 TTSGLPTSSVSTPLSNSSAYPSSGSS--TFSRLSSTLTSSIIPTETFGSTSGSATGTRPT 777

Query: 398 PSSS 409
            SSS
Sbjct: 778 GSSS 781


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 705 LAPRALKVPELITSA-LNPDFLSAVYLTVRMEPSAS*RLYSPFTTSPSRISCW 550
           L P+ ++ PE++     +  +L  VY   +++PS S R +SP     S +  W
Sbjct: 219 LRPKHVRDPEILEMCRADYMYLGYVYFLNKLKPSVSLRFHSPMIDDISAVKTW 271


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = -3

Query: 702 APRALKVPELITSALNPDF--LSAVYLTVRMEPSAS*RLYSPFT--TSPSRISCWYLLSP 535
           AP     P L  + ++PD    S V+  +  +   S  L  P T  T   R+   YL  P
Sbjct: 206 APLLTVAPTLGLNRIHPDGKEASTVFKRIAFDGHTSLVLCKPLTGRTHQLRVHLQYLGYP 265

Query: 534 VWGSSILYSKHIWGMHNDLHGE 469
           +    I  +K +WG     +GE
Sbjct: 266 IANDPIYANKRVWGPSLGKNGE 287


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 359 YRCVMVYRYKVVRLFVWLLMVSLLMMGIVTDDTLGDTACP 240
           +RC+ V     + LF+W+L V +  + I+T   +GD   P
Sbjct: 311 WRCMAVALEFPITLFLWMLAVYVSFLPIMTRRHIGDYGVP 350


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 28  ALGIVIFLTVGYCQEHNHHG--YTLQTLVKH--DVPQKIKTHHAIPVK 159
           AL IVI +TVG+ QE+        L  LV H  +V +  KT H +  K
Sbjct: 88  ALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEHIVASK 135


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 236 PTGTLCLPKYRPSRYPS*ANSP*ATTRTASL 328
           PTGT  +PK  PS  PS  N   A+T +A +
Sbjct: 203 PTGTPFVPKSPPSSSPSTTNVSNASTSSAPI 233


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 158 LTGIAWWVLIFCGTSCFTK 102
           + GIAW  LIF   SC TK
Sbjct: 31  ILGIAWLFLIFLCCSCLTK 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,982
Number of Sequences: 5004
Number of extensions: 52789
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)