Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30295
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       33   0.23 
02_01_0169 - 1166683-1166790,1166981-1167043,1167376-1167447,116...    31   1.2  
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600...    28   6.5  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    28   6.5  
06_03_0647 + 23122074-23122187,23123423-23123488,23124467-231246...    28   6.5  
12_02_1164 + 26620779-26621087                                         28   8.6  
03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143           28   8.6  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +2

Query: 185 KLMKPTPH-PLTRTTQGIPTGTLCLPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS 361
           +L  PT   P T +T+ + T T  +P    +   S A S   +T   SLL + T     +
Sbjct: 500 ELSTPTSQIPSTASTRELSTATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSSTSKIPST 559

Query: 362 P*SCDRCSNTPR-PSSSCTGTPYST 433
           P +C+  + T + PS++CT +P ST
Sbjct: 560 PSTCELSTATGKIPSTTCT-SPLST 583


>02_01_0169 -
           1166683-1166790,1166981-1167043,1167376-1167447,
           1167734-1167811,1168420-1168548,1169373-1169483,
           1169587-1169655,1169733-1169870,1170322-1170460,
           1170797-1170852,1171677-1171732,1172034-1172078,
           1172225-1172303,1172770-1172864,1173074-1173449
          Length = 537

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 401 WGVVYWSSDHSFMDYRCVMVYRYKVVRLFVWLLMVSLLMMGIVTDDTLG--DTACPWECP 228
           WG     +  SFM     ++Y  K   +   +L+ SL+M+G +T  T+G   T  PW  P
Sbjct: 363 WGEPLSQTAQSFMPE---LIYGAKCNLMKARMLLKSLVMIGAITGTTVGAVGTLVPWLFP 419

Query: 227 EWFS 216
             F+
Sbjct: 420 SLFT 423


>12_02_0188 -
           15158824-15159215,15159299-15159809,15159885-15160015,
           15160107-15160310,15160385-15161066,15161158-15161414,
           15161491-15161631,15161731-15162136
          Length = 907

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 239 WECPEWFS*ADAAWASLVS*TGATW 165
           W+ P+W++   A W +  S TG +W
Sbjct: 853 WQEPQWYAQLYAQWQTTASWTGQSW 877


>10_08_0521 +
           18500105-18500529,18501216-18501284,18501467-18501555,
           18501726-18501838,18502023-18502124,18502576-18502663,
           18502795-18503361,18503766-18504149,18504168-18504384,
           18504466-18504548,18505174-18505256,18505796-18506032,
           18506481-18506658,18506814-18507328,18507740-18507916,
           18508385-18508768,18508885-18509031
          Length = 1285

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 212 ADAAWASLVS*TGATWAVLTGIAWWVLIFCGTS 114
           + A W   ++ +   W++L G+ WW  + C  S
Sbjct: 674 SSAVWERAIADSRFWWSLLAGVDWWDAVGCTQS 706


>06_03_0647 +
           23122074-23122187,23123423-23123488,23124467-23124676,
           23124849-23125060,23125641-23126208
          Length = 389

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 351 RDGVPVQSSEAVRVVAHGEFAHDGYRDGR 265
           RD  P  + E VR+ A G + +DGY +G+
Sbjct: 226 RDHKPSCNREKVRIEASGGYVYDGYLNGQ 254


>12_02_1164 + 26620779-26621087
          Length = 102

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 495 GMHNDLHGE---IRRGEIHHGGRFVEYGVPVHDELGRGVLEQRSQLHG 361
           G H ++HG+      GE   GG    +G    +E G GV  +R ++HG
Sbjct: 35  GRHEEVHGDGGVAGCGEEEQGGDAAGHG---EEEQGGGVARRREEVHG 79


>03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143
          Length = 379

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 615 PFVPLNTQPTKNQDSTLKLSTPGLSKHEEPIS 710
           PF  LN +P K++   L L+  GL K ++ ++
Sbjct: 286 PFAELNDEPAKSELENLALNIQGLGKGKQDVN 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,767,302
Number of Sequences: 37544
Number of extensions: 358872
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)