Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30295
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)                 32   0.54 
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)                   30   2.2  
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)                 29   3.8  
SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6)                      29   5.0  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)                 29   5.0  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_28246| Best HMM Match : M (HMM E-Value=0.0007)                      28   8.8  
SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18)                     28   8.8  

>SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)
          Length = 872

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 512 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKKSGFNAEVINSG 682
           YK  +P   D   +  ++DG   KG Y L+   GS+  +++   K  G   E   SG
Sbjct: 135 YKTSNPTISDTTLEKRLQDGSPSKGSYYLNTI-GSLDILQWVVGKAGGAAPETTPSG 190


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +2

Query: 209 PLTRTTQGIPTGTLCLPKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTYSP*S 370
           P T+ T+  P+     P   PSRY      PS  N+P +T    +   + TPSR  +P S
Sbjct: 498 PNTKVTESTPS-RYNTPLPTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYNTPWS 555

Query: 371 CDRCSNTPRPSSSCTGTPYST 433
                NTP  + S   TP+ST
Sbjct: 556 TPSRYNTPWSTPSRYNTPWST 576



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +2

Query: 257 PKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTYSP*SCDRCSNTPRPSSSCTG 418
           P   PSRY      PS  N+P +T    +   + TPSR  +P S     NTP P+ S   
Sbjct: 613 PWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYNTPWSTPSRYNTPWPTPSRYN 671

Query: 419 TPYST 433
           TP+ST
Sbjct: 672 TPWST 676



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
 Frame = +2

Query: 197 PTPHPLTRTTQGIPTGTLCLPKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTY 358
           P P P    T          P   PSRY      PS  N+P +T    +   + TPSR  
Sbjct: 513 PLPTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYN 571

Query: 359 SP*SCDRCSNTPRPSSSCTGTPYST 433
           +P S     NTP  + S   TP+ST
Sbjct: 572 TPWSTPSRYNTPWSTPSRYNTPWST 596


>SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)
          Length = 291

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 61  YCQEHNHHGYTLQTLVKHDVPQKIKTHHAIPVKTAHVAPVY 183
           Y  EH+ H  +   + +HDVP K   HH    K  H  P Y
Sbjct: 142 YHHEHSRHPVS-DYIPEHDVPDKKPEHHVPDNKPEHHIPDY 181


>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
          Length = 1241

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 672  ITSALNPDFLSAVYLTVRMEPSAS*RLYSPF--TTSPSRISCWYLLSPVWGS 523
            IT+ +N    + +  TV    +A+  + + +  +TSPS +   Y L+P WG+
Sbjct: 900  ITAVVNTTLATLMNTTVAPMTAAAMNMTTAYANSTSPSSVEACYKLTPYWGN 951


>SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6)
          Length = 340

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 209 PLTRTT-QGIPTGTLCLPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS 361
           PLT     G+P GT  LP+Y P R       P  T+RT++   T T + TY+
Sbjct: 231 PLTGVKYSGLPEGTKVLPEYTPRR-------PVNTSRTSASDYTDTEALTYA 275


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 581  KGEYSLHEADGSIRTVKYTADKKSGF 658
            KG Y  H+ DG  RT++Y +    G+
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
          Length = 364

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 353 CVMVYRYKVVRLFVWLLMVSLLMMGIV 273
           C MVYRY+++R F    +VSL +  I+
Sbjct: 28  CYMVYRYRILRTFTNGFVVSLALSDIL 54


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 67  QEHNHHGYTLQTLVKHDVPQKIKTHHAIPVK 159
           Q+H H    L+T+VK D P  ++T  +  +K
Sbjct: 658 QDHMHESLKLKTIVKGDAPTSLQTSTSANIK 688


>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
          Length = 1121

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 230  GIPTGTLCLPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS 361
            G+P GT  LP+Y P R       P  T+RT++   T T + TY+
Sbjct: 1020 GLPEGTKVLPEYTPRR-------PVNTSRTSASDYTDTEALTYA 1056


>SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18)
          Length = 125

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = +2

Query: 203 PHPLTRTTQGIPTGTLCL-PKYRPSRYPS*ANSP*ATTRTASLL--CTGTP---SR-TYS 361
           PH ++R TQ     + C  P +  SR     N     T+  + +  CT  P   SR T  
Sbjct: 18  PHEMSRCTQQTYEMSRCTQPPHEMSRCTQQPNKMSRCTQQPNEMSRCTQPPHEMSRCTQP 77

Query: 362 P*SCDRCSNTPRPSSSCTGTP 424
           P    RC+  P   S CT  P
Sbjct: 78  PHEMSRCTQQPNKMSRCTQQP 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,733,995
Number of Sequences: 59808
Number of extensions: 428521
Number of successful extensions: 1563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)