Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30295
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical ...    33   0.27 
AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical ...    31   0.83 
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,...    31   1.1  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81527-1|CAB04269.3|  290|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    28   7.7  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    28   7.7  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    28   7.7  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    28   7.7  

>AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical
           protein Y87G2A.1 protein.
          Length = 780

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 49  LTVGYCQEHNHHGYTLQTLVKHDVPQKIKTHHAIPVKTAHV 171
           +T+ YC EH  HGY L+   +H  P+       +PV   +V
Sbjct: 398 VTIDYCLEHQQHGYDLEP--RHFGPRSATNSRGLPVAKDYV 436


>AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical
           protein C51F7.1 protein.
          Length = 947

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 618 FVPLNTQPTKNQDSTLKLSTPGLSKHEEPISPAQ 719
           FVP+ T  T    +T+  S    S H++P+ P+Q
Sbjct: 870 FVPMTTSTTTTSSATMTSSLITASSHQQPLQPSQ 903


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 495 PKYALNTKLKIPTPVTISTSTRSAMVM**KENTVFTRLTAPFVPLNTQPTKNQDSTLKLS 674
           PK  + T   +P P T ST+T +  ++    ++  T  T   VP+ +  T+   +T   S
Sbjct: 433 PKTTIFTTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPTTTTYTTS 492

Query: 675 T 677
           T
Sbjct: 493 T 493


>U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,
           short chain protein29 protein.
          Length = 427

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 422 VYRYMMNW-GVVYWSSDHSFMDYRCV-MVYRYKVVRLFVWLLMVSLLMMGIVT 270
           V R + N+ GV Y +SD SF     + M   YK  +LF WLL+V  L +  ++
Sbjct: 286 VCRSLRNYLGVKYSASDPSFCKLTLIEMSDYYKTPQLFWWLLIVPALAINYIS 338


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 314 RTASLLCTGTPSRTYSP*SCDRCSNT-PRPSSSCTGTP 424
           RT +  C+GTP+  Y P SC     T P  +++C   P
Sbjct: 773 RTTTGFCSGTPTTPYPPNSCQNGGVTDPTNNATCICPP 810


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 314 RTASLLCTGTPSRTYSP*SCDRCSNT-PRPSSSCTGTP 424
           RT +  C+GTP+  Y P SC     T P  +++C   P
Sbjct: 773 RTTTGFCSGTPTTPYPPNSCQNGGVTDPTNNATCICPP 810


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 314 RTASLLCTGTPSRTYSP*SCDRCSNT-PRPSSSCTGTP 424
           RT +  C+GTP+  Y P SC     T P  +++C   P
Sbjct: 773 RTTTGFCSGTPTTPYPPNSCQNGGVTDPTNNATCICPP 810


>Z81527-1|CAB04269.3|  290|Caenorhabditis elegans Hypothetical
           protein F35E12.1 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 555 CWYLLSPVWGSSILYSKHIWGMHNDLHGEIRRG 457
           CW   + VW         I  +HNDL  EI +G
Sbjct: 90  CWQECAKVWREVATAQASIVKIHNDLRSEIAKG 122


>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
           protein C05A9.1 protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 31  LGIVIFLTVGYCQEHNHH--GYTLQTLVKHDVPQKIKTHHAIPVKTAHVAPVYET 189
           LG+V  +  G CQ    +  G T Q LVK  V   I      PV  AH   ++E+
Sbjct: 70  LGVVFSILTGMCQPFESYTLGETSQVLVK--VTNAINNKTIDPVDLAHAYKLFES 122


>Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical
           protein W07G1.3 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 188 LMKP-TPHPLTRTTQGIPTGTLC 253
           +M P  PHP+   T G+P GT C
Sbjct: 138 VMSPIAPHPIPVDTNGVPLGTQC 160


>U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 512 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 649
           Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 19  YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 64


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 512  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 649
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1659 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1704


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 512  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 649
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 512  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 649
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,733
Number of Sequences: 27780
Number of extensions: 304237
Number of successful extensions: 877
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)