Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30295
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43660.1 68418.m05336 expressed protein similar to unknown pr...    31   0.58 
At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplas...    31   0.77 
At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplas...    31   0.77 
At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-...    30   1.8  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    29   3.1  
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    28   7.2  

>At5g43660.1 68418.m05336 expressed protein similar to unknown
           protein (gb|AAB72163.1)
          Length = 361

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 623 YEWSRQPREDCILLSLHHHRGSRAGTYCHRCGDLQFCIQSIF 498
           +E+  +P +  + L  H H    A T C R   + +CI S+F
Sbjct: 268 FEYCHEPGQAILHLGCHSHGAKAAITSCSRANMILWCINSLF 309


>At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 1035

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 588 NTVFTRLTAPFVPLNTQPTKNQDSTLKLSTPGLSKHEEPIS 710
           + +F R T PF   ++ P     S+   S+  LS HE+PIS
Sbjct: 35  SALFRRKTLPFFERHSLPISASSSSSSSSSTSLSVHEKPIS 75


>At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 993

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 588 NTVFTRLTAPFVPLNTQPTKNQDSTLKLSTPGLSKHEEPIS 710
           + +F R T PF   ++ P     S+   S+  LS HE+PIS
Sbjct: 35  SALFRRKTLPFFERHSLPISASSSSSSSSSTSLSVHEKPIS 75


>At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-17)
           / HD-ZIP transcription factor 17 identical to
           (GI:18857716) homeodomain-leucine zipper protein ATHB-17
           (GI:18857716) [Arabidopsis thaliana]
          Length = 275

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 434 LLNMVYRYMMNWGVVYWSSDHSFMDYRCVMVYRYK-VVRLFVWLLMVSL 291
           ++ +++ Y+  +    ++  H  MDY CV +Y+YK +V L V L  + L
Sbjct: 1   MIKLLFTYICTYTYKLYALYH--MDYACVCMYKYKGIVTLQVCLFYIKL 47


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +3

Query: 498 KYALNTKLKIPTPVTISTSTRSAMVM**KENTVFTRLTAPFVPLNTQPTKNQDSTLKLST 677
           K  + T +K  T  T + +  +A     KE    T+ TAP +   T PTK      K + 
Sbjct: 8   KRGVGTTVKSTTEETATATKETAPAT--KETAPATKETAPTITKETAPTKETAPATKETA 65

Query: 678 PGLSKHEEP 704
           P  ++ EEP
Sbjct: 66  P--TRTEEP 72


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 67  QEHNHHGYTLQTLVKHDVPQKIKTH 141
           Q H HH    QT +++ +P++I +H
Sbjct: 676 QNHKHHEIQNQTAMENQIPEEITSH 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,404
Number of Sequences: 28952
Number of extensions: 283459
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)