Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30294
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 121 7e-28
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 120 1e-27
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 118 4e-27
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 114 8e-26
08_02_0103 - 12400494-12400626,12400882-12400958 29 5.2
11_01_0355 + 2679561-2680985,2681183-2682295 28 9.2
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 121 bits (291), Expect = 7e-28
Identities = 53/79 (67%), Positives = 66/79 (83%)
Frame = +1
Query: 505 QGAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDR 684
+G GVAL+M+N D SI FA SS AL +K+PLYLSTKNTILKKYDGRFKDIFQ++Y+
Sbjct: 208 KGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTKNTILKKYDGRFKDIFQEVYEE 267
Query: 685 EYKKQFEDAGIWYEHRLID 741
++K++FE+ IWYEHRLID
Sbjct: 268 KWKEKFEENSIWYEHRLID 286
Score = 64.9 bits (151), Expect = 7e-11
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +2
Query: 254 MKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 358
+K MW+SPNGTIRNIL GTVFRE I+CKN+PR+++
Sbjct: 158 LKSMWRSPNGTIRNILNGTVFREPILCKNVPRILS 192
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/60 (45%), Positives = 40/60 (66%)
Frame = +3
Query: 75 EKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFK 254
+ LI P+L++++ +DLG+ NRD TDD+VT++ AEA T+T DE RV+EFK
Sbjct: 99 DDLIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFK 157
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 120 bits (289), Expect = 1e-27
Identities = 57/95 (60%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 KIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAE 179
KIK A P+V++ GDEMTRI W IK+KLI PFLD+++ YDLG+ +RD TDD+VT++ AE
Sbjct: 5 KIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAAE 64
Query: 180 AIKKYNVGIKCATITPDEKRVEEFK*RKCGKALMG 284
A KYNV IKCATITPDE RV+EF ++ K+ G
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNG 99
Score = 118 bits (285), Expect = 4e-27
Identities = 53/76 (69%), Positives = 64/76 (84%)
Frame = +1
Query: 514 GVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYK 693
GVAL+M+NTD SI FA +S A ++K+PLYLSTKNTILKKYDGRFKDIFQ++Y+ +K
Sbjct: 177 GVALSMYNTDESIRAFAEASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWK 236
Query: 694 KQFEDAGIWYEHRLID 741
+FE AGIWYEHRLID
Sbjct: 237 SKFEAAGIWYEHRLID 252
Score = 116 bits (279), Expect = 2e-26
Identities = 49/70 (70%), Positives = 59/70 (84%)
Frame = +2
Query: 254 MKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVP 433
+K+MWKSPNGTIRNI+ GTVFRE IICKN+PRLV GW KPI IGRHA DQY+ATD V+
Sbjct: 90 LKQMWKSPNGTIRNIINGTVFREPIICKNVPRLVPGWTKPICIGRHAFGDQYRATDAVLK 149
Query: 434 GAGTLEIIFK 463
G G L+++F+
Sbjct: 150 GPGKLKLVFE 159
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 118 bits (285), Expect = 4e-27
Identities = 52/76 (68%), Positives = 64/76 (84%)
Frame = +1
Query: 514 GVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYK 693
GVA +M+NTD SI FA +S A ++K+PLYLSTKNTILKKYDGRFKDIFQ++Y+ ++K
Sbjct: 177 GVAQSMYNTDESIRSFAEASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWK 236
Query: 694 KQFEDAGIWYEHRLID 741
+FE AGIWYEHRLID
Sbjct: 237 SKFEAAGIWYEHRLID 252
Score = 117 bits (282), Expect = 9e-27
Identities = 51/75 (68%), Positives = 60/75 (80%)
Frame = +2
Query: 254 MKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVP 433
+K MWKSPNGTIRNIL GTVFRE IICKNIPRLV GW KPI IGRHA DQY+ATD V+
Sbjct: 90 LKSMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIK 149
Query: 434 GAGTLEIIFKPESGE 478
G G L+++++ + E
Sbjct: 150 GPGKLKLVYEGKDEE 164
Score = 116 bits (280), Expect = 2e-26
Identities = 54/95 (56%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 KIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAE 179
KIK A P+V++ GDEMTR+ W IK+KLI PFL++++ +DLG+ RD+TDD+VT++ AE
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAE 64
Query: 180 AIKKYNVGIKCATITPDEKRVEEFK*RKCGKALMG 284
A KYNV IKCATITPDE RV+EF + K+ G
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNG 99
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 114 bits (274), Expect = 8e-26
Identities = 50/69 (72%), Positives = 56/69 (81%)
Frame = +2
Query: 254 MKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVP 433
+ MWKSPNGTIRNIL GTVFRE IICKNIPRLV GW KPI IGRHA DQY+ATD V+
Sbjct: 133 LSAMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIK 192
Query: 434 GAGTLEIIF 460
G G L+++F
Sbjct: 193 GPGKLKLVF 201
Score = 101 bits (242), Expect = 6e-22
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = +1
Query: 514 GVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYK 693
GVAL+M+NTD SI FA +S A +++PLYLSTKNTILKKYDGRFKDIFQ+ Y+ +++
Sbjct: 220 GVALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWR 279
Query: 694 KQFEDAGIW 720
+F+DAGIW
Sbjct: 280 AKFDDAGIW 288
Score = 99 bits (238), Expect = 2e-21
Identities = 44/64 (68%), Positives = 52/64 (81%)
Frame = +3
Query: 36 GDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 215
GDEMTR+IW IK+KLI PFLD+++ YDLG+ NRD T D+VTI+ AEA KYNV IKCA
Sbjct: 42 GDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNVAIKCA 101
Query: 216 TITP 227
TITP
Sbjct: 102 TITP 105
>08_02_0103 - 12400494-12400626,12400882-12400958
Length = 69
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 51 WSFHHQGCQQQVQP 10
WS HHQGCQ + P
Sbjct: 12 WSLHHQGCQPRALP 25
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 355 YKSRYILANNSLPENSTTKNITDGPIRAFPHFLHLNSSTL 236
Y + L N PE+++ N DG P F+ LN+ L
Sbjct: 548 YHDHHPLDTNPSPESNSVSNSLDGGETRRPKFIELNAENL 587
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,615,855
Number of Sequences: 37544
Number of extensions: 396623
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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