Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30294
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 151 4e-37
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 128 4e-30
SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33) 29 5.4
SB_55966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 28 9.4
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_14989| Best HMM Match : UPF0181 (HMM E-Value=0.11) 28 9.4
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 151 bits (367), Expect = 4e-37
Identities = 68/86 (79%), Positives = 77/86 (89%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 MKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVP 433
+KKMWKSPNGTIRNILGGTVFREAIICKNIPRLV+ W KPIIIGRHAHADQYKATDFVVP
Sbjct: 52 LKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVP 111
Query: 434 GAGTLEIIFKP-ESGEAIKHVVHEYK 508
G G +EI++ P + GE IK+ V+E+K
Sbjct: 112 GPGKVEIVYSPADGGEPIKYTVNEFK 137
Score = 86.2 bits (204), Expect = 3e-17
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 102 IELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFK*RKCGKALM 281
+EL YDL +ENRD T+DQVTID A AIK+ +VGIKCATITPDEKRVEEFK +K K+
Sbjct: 1 MELKSYDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPN 60
Query: 282 G 284
G
Sbjct: 61 G 61
Score = 72.1 bits (169), Expect = 4e-13
Identities = 39/78 (50%), Positives = 47/78 (60%)
Frame = +1
Query: 508 GAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDRE 687
G GV + MFNTD SI FAHSSF++ALD+KYPLY+ RE
Sbjct: 139 GGGVTMGMFNTDVSIRAFAHSSFQYALDKKYPLYM-----------------------RE 175
Query: 688 YKKQFEDAGIWYEHRLID 741
YK +FE++ IWYEHRLID
Sbjct: 176 YKSKFEESNIWYEHRLID 193
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 128 bits (310), Expect = 4e-30
Identities = 57/84 (67%), Positives = 65/84 (77%)
Frame = +2
Query: 254 MKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVP 433
+KKMWKSPNGTIRNILGGTVFR IICK +PRLV GW+KPI+IGRHA DQY+A DF V
Sbjct: 78 LKKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAVN 137
Query: 434 GAGTLEIIFKPESGEAIKHVVHEY 505
G G+ EI F PESG + V E+
Sbjct: 138 GPGSFEISFTPESGGKLTTEVFEF 161
Score = 126 bits (304), Expect = 2e-29
Identities = 53/76 (69%), Positives = 66/76 (86%)
Frame = +1
Query: 514 GVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYK 693
GV + M+NTD +I DFAHS ++A+ ++ PLY+STKNTILKKYDGRFKDIFQDIY+REY+
Sbjct: 166 GVMMGMYNTDEAIRDFAHSCMQYAIHKQVPLYMSTKNTILKKYDGRFKDIFQDIYEREYE 225
Query: 694 KQFEDAGIWYEHRLID 741
QF++ GIWYEHRLID
Sbjct: 226 SQFKELGIWYEHRLID 241
Score = 93.5 bits (222), Expect = 2e-19
Identities = 41/69 (59%), Positives = 58/69 (84%)
Frame = +3
Query: 78 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFK* 257
+LI P+LD+++ +DLG+E+RD T+D+VT++ AEAI+K++VGIKCATITPDE RVEEFK
Sbjct: 19 QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78
Query: 258 RKCGKALMG 284
+K K+ G
Sbjct: 79 KKMWKSPNG 87
>SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)
Length = 680
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 640 YDGRFKDIFQDIYDREYKKQFEDAGIW 720
+D F+D F D+YDRE Q D+ W
Sbjct: 345 HDDDFEDSFVDVYDRESDYQGYDSCTW 371
>SB_55966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 717 DTSILKLFLVLPVINILKDVFETTIVFL 634
DT I KLFL+ +I VF+ TI+FL
Sbjct: 174 DTDIAKLFLLTKYFSIKLFVFQLTILFL 201
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +3
Query: 54 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 215
++ + K+K +LP++ +E+ + DL + R T++ V + A+K ++ +
Sbjct: 574 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 633
Query: 216 TITPDEKRVEE 248
+ P+E+RV +
Sbjct: 634 DVEPNEQRVRQ 644
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 81 LILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 215
L+L L +E+ LG N+DK +T D IK+Y K A
Sbjct: 442 LLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYPKNNKAA 486
>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = +3
Query: 54 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 215
++ + K+K +LP++ +E+ + DL ++ R T++ V + A+K ++ +
Sbjct: 690 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDDLRWITNEDVPLATVSAVKMVQFNLQKS 749
Query: 216 TITPDEKRVEE 248
+ P+E+RV +
Sbjct: 750 DVEPNEQRVRQ 760
>SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +1
Query: 538 TDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKK 696
TD +D +F + ++P+Y+ + + + + G D IYD K
Sbjct: 330 TDDHTLDTDDKAFNLLMGSQHPVYIDSSLSDVSDHSGDISDFEHPIYDESLLK 382
>SB_14989| Best HMM Match : UPF0181 (HMM E-Value=0.11)
Length = 446
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 714 TSILKLFLVLPVINILKDVFETTIVFLEDCILSA*VQRVFSVQSK 580
TS L LFL L ++ +L+D+ T+V D + S + ++ SK
Sbjct: 89 TSTLYLFLWLSLMELLEDLSPVTVVTHRDVLTSQATTQALNLASK 133
>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1364
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +3
Query: 54 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 215
++ + K+K +LP++ +E+ + DL + R T++ V + A+K ++ +
Sbjct: 688 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 747
Query: 216 TITPDEKRVEE 248
+ P+E+RV +
Sbjct: 748 DVKPNEQRVRQ 758
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,956,882
Number of Sequences: 59808
Number of extensions: 484188
Number of successful extensions: 1199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -