Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30293
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    74   1e-15
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.5  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.5  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 36/47 (76%), Positives = 42/47 (89%), Gaps = 1/47 (2%)
 Frame = +2

Query: 254 YPSRRRSLVDDARFETLVVKQTKQSVLEEARARANDSGLESDF-IQD 391
           YP+RRRSLVDDARFETLVVKQTKQSVL+EAR RANDS ++ +  I+D
Sbjct: 26  YPARRRSLVDDARFETLVVKQTKQSVLDEARLRANDSSVDPEIDIED 72



 Score = 58.8 bits (136), Expect = 4e-11
 Identities = 28/70 (40%), Positives = 41/70 (58%)
 Frame = +1

Query: 496 RCEGYEDYTLTEEEVILQNXXXXXXXXXXXXXXXXXXXHMRDGMGSLARILKTIDNYKGC 675
           + +G +D  LTEEEV+L N                    +R+GM SL+R+LK+I+ ++G 
Sbjct: 77  KIDGEDDSGLTEEEVVLSNAIAEGPDAEKALQRAALILRLREGMNSLSRVLKSIEKHQGA 136

Query: 676 VQHLETRPSQ 705
           V HLETRP+Q
Sbjct: 137 VCHLETRPNQ 146



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +3

Query: 186 AVAAAQKNREMFAIKKSYSIENG 254
           AVAAAQKNREMFAIKKSYSIENG
Sbjct: 3   AVAAAQKNREMFAIKKSYSIENG 25


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 265 ARWVPFSIL*DFLMANISRFFWAAATAIVLFIFF 164
           A WVP+  L   ++ ++S      AT  V  IFF
Sbjct: 132 AVWVPYKHLYVNILIHLSGLVTIVATLTVTIIFF 165


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 265 ARWVPFSIL*DFLMANISRFFWAAATAIVLFIFF 164
           A WVP+  L   ++ ++S      AT  V  IFF
Sbjct: 132 AVWVPYKHLYVNILIHLSGLVTIVATLTVTIIFF 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,018
Number of Sequences: 336
Number of extensions: 3257
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)