Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30293
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.89 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   1.6  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   3.6  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   3.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   4.8  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   4.8  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   6.3  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   8.3  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   8.3  

>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +2

Query: 164 EEDKEYNGSRSSPEEPRNVRHQEILQYRERYPSRRRSLVDDARFETLVVKQTKQSVLEEA 343
           E ++++   +S     R    QE + YR  Y           R  T  + Q  QS   + 
Sbjct: 133 EFERQFEEEKSRLAAVRKNTEQEKMGYRGGYQMHSTPWASSPRNST--IPQRSQSFYNDT 190

Query: 344 RARANDSGLE-SDFIQDGVHIGNGDN 418
           R R++D G   +DF+    ++ N DN
Sbjct: 191 R-RSSDLGANAADFVTPPGNVANSDN 215


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 161 RTHHWDLKGLNVRFTARLASLCLRELLVSTTGLCLSACD 45
           R H  +L+ LN RFT     +   EL +S   L +SACD
Sbjct: 826 RQHLSELESLNQRFTEISERIPSAELEISKLQLDVSACD 864


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 224 HQEILQYRERYPSRRRSLVDDARFETLVVKQTKQSVLEEAR 346
           H +  Q R+R+PS+   + D+   E   +K   +S L E +
Sbjct: 7   HAQSGQLRQRFPSKHSEIEDEVANEKEELKDATKSALGEVK 47


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 290 GRHQPRNDGEMGTVLDTVGFLDGEHFAVLLGCCDCHCTLYLLLR 159
           GR      G +G ++  VG   G+H  V    C+C+  L LL+R
Sbjct: 305 GRCSAEIRGSLGMLVKAVG-QKGKHGTVSYTVCECYEVLGLLIR 347


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 164 EEDKEYNGSRSSPEEPRNVRHQEILQYRERYPSRRRSL 277
           E+++     R    EPR++R+  + + R   PSR RS+
Sbjct: 72  EDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERSV 109


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 266 GEMGTVLDTVGFLDGEHFAVLLGCCDCHCTLYLL 165
           G+    L  V  +DG H A  L  CD   TL+L+
Sbjct: 180 GQENLELHFVSNIDGTHLAEALKKCDPETTLFLI 213


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = -2

Query: 332 VRSAWFV*LPVFRSGRHQPRNDGEMGTVLDTVGFLDGEHFAVLLGCCDCHCTLYLLLRTH 153
           +R++W    PV + G + P       TVL  +G    + F+V     +    +  +LR  
Sbjct: 307 IRNSWSDACPVVKDGSNSPSASKVCRTVLSMLGLFTEQVFSVADEPNNHRKKISQVLRKI 366

Query: 152 HWDLKGLNVRF 120
           + D++ +N+ +
Sbjct: 367 NRDIELININY 377


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 355 GSGASLFKYALLGLFDYQCFEAGVINQGTT 266
           GSG + F YAL G  DY      +  +G T
Sbjct: 252 GSGKTSFLYALAGELDYDICVLNLAEKGLT 281


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 494 HRLYQHQRGDHFSFHLAGSHLQRLENYH 411
           HR   H+R + +  HL+  H     NYH
Sbjct: 147 HRHGSHRRHEPYRTHLSRHHRHSTTNYH 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,485
Number of Sequences: 5004
Number of extensions: 58394
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)