Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30293
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    38   0.008
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    31   1.2  
10_08_0399 - 17614585-17614809,17614860-17615168                       29   5.0  
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693...    29   5.0  
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756...    28   6.6  
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290...    28   6.6  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    28   8.7  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +2

Query: 182 NGSRSSPEEPRNVRHQEILQYRERYPSRRRSLVDDARFETLVVKQTKQSVLEEARARAND 361
           +GS+S+    +  R Q + ++  R  SR R + DD R +++ VK+       + R  A +
Sbjct: 514 SGSKSTGRHHKKTRRQSLEEHSTRRSSRHRDMEDDGRGQSVAVKRKDHHDTSDDRWVATN 573

Query: 362 SGLESD 379
           S ++SD
Sbjct: 574 SDVDSD 579


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 500 HRHRLYQHQRGDHFSFHLAGSHLQRLENYHRYQYALHLG*NQIPSQSHWLGR 345
           HRHR + H  GDH   H  G H QR  ++H   + +    +     SH  GR
Sbjct: 542 HRHR-HGHSHGDH-HHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEAGR 591


>10_08_0399 - 17614585-17614809,17614860-17615168
          Length = 177

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 576 GTSSPTSCPFIAYARWNGIPRTH 644
           GTSS +S P  AY R  G P TH
Sbjct: 42  GTSSASSSPVEAYLRGGGAPPTH 64


>09_02_0288 +
           6936867-6936879,6936965-6937038,6937445-6937588,
           6937754-6937958,6938552-6938852,6938952-6939150,
           6939393-6939477,6939554-6939595,6939676-6939724,
           6939872-6939941,6940296-6940301
          Length = 395

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 281 DDARFETLVVKQTKQSVLE---EARARANDSGLESDFIQDG-VHIG-NGDNSPTVEDG 439
           D+  F TLV +   + V E   +    A+D   ESDFI DG V +  +   S +V+DG
Sbjct: 76  DECSFLTLVRESYGEDVGESDTDQEFNASDDSYESDFIDDGDVEVSEDKSRSDSVDDG 133


>07_03_0169 +
           14670994-14673714,14673799-14673879,14675460-14675612,
           14675910-14676073,14676162-14676309,14676426-14676548,
           14676754-14676841,14677493-14677674
          Length = 1219

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +2

Query: 182 NGSRSSPEEPRNVRHQEILQYRERYPSRRRSLVDDARFETLVVKQTKQSVLEEARARAND 361
           + +++ P     V H E +   +     R S  DD+     ++ Q++  V +E+ A A+D
Sbjct: 552 HSNKNPPPHSGRVFHSERIPREQAGSLNRLSKSDDSLNSQFLILQSQSGVAKESIAEASD 611

Query: 362 SGLE-SDFIQDGVHIGNGDNSPTVEDGTQQDETKN 463
             +E ++         N ++  TV+  T + E  N
Sbjct: 612 PAIEGTEKSNLDARAINLNDPATVDSVTPEKECAN 646


>05_06_0136 +
           25928152-25928659,25928767-25928899,25928987-25929058,
           25929150-25929221,25929507-25929670,25929760-25930025,
           25930115-25930241,25930599-25930667,25930765-25930957,
           25931053-25931299,25931342-25931470,25932367-25932654
          Length = 755

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 165 KKIKSTMAVAAAQKNREM--FAIKKSYSIENGTHLAVVPWLMTP 290
           + +K+T  +  A+   ++  F + KS+++ENGTH++    + TP
Sbjct: 486 RDVKATNILLNARLEAKIADFGLSKSFNLENGTHVSTNTLVGTP 529


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -2

Query: 509 YPSHRHRL-YQHQRGDHFSFHLA----GSHLQRLENYHRYQY 399
           Y  H H+  Y+HQ   HF  H        H    +N+H+ QY
Sbjct: 154 YQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQY 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,548,553
Number of Sequences: 37544
Number of extensions: 406971
Number of successful extensions: 1133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)