Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30293
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_44905| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)        28   6.7  
SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)                      28   8.9  
SB_21828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 613 MRDGMGSLARILKTIDNYKGCVQHLETRPSQVTGVPFD 726
           + + +G+LAR LK  +++   + H+E+RPS+     +D
Sbjct: 37  LNEEVGALARALKLFEDHHVNMTHIESRPSKACKTRYD 74


>SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 658 RWFSECVRGIPFHRAYAIKGQLVGELVPLQKIH*QHFARSLLLRSAYNPRTLR 500
           RW  + VR +  HRAY     +V  +VP+  +   + A  +++R A+  R ++
Sbjct: 191 RWSQDRVRHVAIHRAYITATCVVFVIVPMVLLTGMYVAIMVVVRMAFLTRQVK 243


>SB_44905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
 Frame = +2

Query: 191 RSSPEEPRNVRHQEILQYRERYPSRRRSLVDDARFETLVVKQT--KQSVLEEARARANDS 364
           + + E P   R +EIL+ RE++ S +    DD   E     QT  K+  L +    ++DS
Sbjct: 69  QQTTENPYRAREREILKQREKFASYKLLSDDDEEEEAPKPSQTDRKRKHLRQKTETSSDS 128

Query: 365 ------GLESDFIQDGVHIGNGDNSPTVEDGTQQD 451
                 G E+  +  G    + D    VE+   +D
Sbjct: 129 SEDEGRGAETSRVSPGGESESEDEWERVENERMKD 163


>SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)
          Length = 472

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 152 HWDLKGLNVRFTARLASLCLRELLVSTTGLCLSACDSS 39
           HW+ +    R   +  SLCL      T+GL L  C+ S
Sbjct: 423 HWEYEKATSRLRHKPTSLCLSSDKHKTSGLTLEQCNGS 460


>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
          Length = 564

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 257 GTVLDTVGFLDGEHFAVLLGCCDCHCTLYL 168
           G VL  +  +D E   +L GC DCH T Y+
Sbjct: 273 GCVLSVIERMDNEFTKMLQGC-DCHSTEYV 301


>SB_21828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 302 LVVKQTKQSVLE--EARARANDSG--LESDFIQDGVHIGNGDNSPTVEDGTQQDETKN 463
           +VV   K +++   E  +  NDSG  +  D + D V   NGD+    +DG   ++ KN
Sbjct: 10  IVVIMMKMAIINIGEDDSGYNDSGDDIGDDSVDDSVDDDNGDDDSFDDDGEGSNQYKN 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,398
Number of Sequences: 59808
Number of extensions: 460831
Number of successful extensions: 1191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)