Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30293
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    76   3e-16
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 76.2 bits (179), Expect = 3e-16
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = +2

Query: 254 YPSRRRSLVDDARFETLVVKQTKQSVLEEARARANDSGLESD 379
           YP+RRRSLVDDARFETLVVKQTKQSVLEEAR RAND+GL  +
Sbjct: 26  YPARRRSLVDDARFETLVVKQTKQSVLEEARQRANDAGLTEE 67



 Score = 64.1 bits (149), Expect = 1e-12
 Identities = 32/71 (45%), Positives = 42/71 (59%)
 Frame = +1

Query: 514 DYTLTEEEVILQNXXXXXXXXXXXXXXXXXXXHMRDGMGSLARILKTIDNYKGCVQHLET 693
           D  LTEEEV+L                      +R+G+GSLARILKTI+N+KG V H+E+
Sbjct: 61  DAGLTEEEVVLAKTIAECPESENTVQKAALVLRLREGIGSLARILKTIENFKGTVTHVES 120

Query: 694 RPSQVTGVPFD 726
           RPS+  G+ FD
Sbjct: 121 RPSKKEGLQFD 131



 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +3

Query: 183 MAVAAAQKNREMFAIKKSYSIENG 254
           MAVAAAQKNREMFAIKKSYSIENG
Sbjct: 2   MAVAAAQKNREMFAIKKSYSIENG 25


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
 Frame = +2

Query: 173 KEYNGSRSSPEE--PRNVRHQEIL-----QYRE-RY--PSRRRSLVDDARFETLVVK--- 313
           + +NG   SPEE  PR     E L     ++ E RY    RR+ L  D       +K   
Sbjct: 9   RSHNGKNGSPEEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWF 68

Query: 314 QTKQSVLEEARARANDSGLESDFIQDGVHIGNGDNSPTVEDGTQ 445
           Q K++ +++A  + N   L+   +  G++  N    P  EDG +
Sbjct: 69  QNKRAKIKKASGQKNPLALQ--LMAQGLY--NHSTVPVDEDGEE 108


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 599 PFYCICAMEWDP 634
           PF C C+M+W P
Sbjct: 681 PFNCNCSMDWLP 692


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 46  SQADRHKPVVETKSS 90
           S A  H+PVVET SS
Sbjct: 496 STAVIHEPVVETNSS 510


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 417 ILQPLKMGPSKMKRKMVTSLMLI 485
           I +PLK G  +  R+M+  + L+
Sbjct: 143 ITKPLKYGVKRTPRRMIVYVSLV 165


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +2

Query: 164  EEDKEYNGSRSSPEEPRNVRHQEILQYRER 253
            +ED++     S+P++P+  + Q+  Q +++
Sbjct: 1435 QEDRDRKTLTSAPQQPQQQQQQQQQQQQQQ 1464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,615
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)