Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30293
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26125.1 68416.m03258 cytochrome P450, putative 35 0.048
At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containi... 32 0.45
At1g12200.1 68414.m01412 flavin-containing monooxygenase family ... 29 2.4
At4g20240.1 68417.m02957 cytochrome P450, putative similar to |C... 29 4.1
At3g11110.1 68416.m01345 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 4.1
At1g16460.2 68414.m01969 mercaptopyruvate sulfurtransferase (MST... 29 4.1
At1g16460.1 68414.m01968 mercaptopyruvate sulfurtransferase (MST... 29 4.1
At3g58890.1 68416.m06563 syntaxin-related family protein contain... 28 5.5
At2g14140.1 68415.m01575 hypothetical protein similar to At2g049... 28 5.5
At1g15420.1 68414.m01850 expressed protein 28 5.5
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 28 7.2
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 28 7.2
At2g18890.1 68415.m02204 protein kinase family protein contains ... 28 7.2
At1g58170.1 68414.m06599 disease resistance-responsive protein-r... 27 9.6
>At3g26125.1 68416.m03258 cytochrome P450, putative
Length = 541
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 328 ALLGLFDYQCFEAGVINQGTTARWVPFSIL*DFLMANISRFFW 200
ALLGLF + C +A + N+G +W F I +F + F W
Sbjct: 26 ALLGLFLFGCLQAKLTNKGEPVQWPVFGITPEFFLHVHDMFGW 68
>At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 225
Score = 31.9 bits (69), Expect = 0.45
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 161 LEEDKEYNGSRSSPEEPRNVRHQEILQYRERYPSRRRSLVDD--ARFETLVVKQTKQSVL 334
LE + Y R SP+ P ++ + IL+ YP R + DD F ++V + +
Sbjct: 152 LEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPEDIC 211
Query: 335 EEARARA-NDSGLE 373
E++ A DS LE
Sbjct: 212 EDSDEEARTDSDLE 225
>At1g12200.1 68414.m01412 flavin-containing monooxygenase family
protein / FMO family protein low similarity to FMO2 from
Homo sapiens [SP|Q99518]; contains Pfam profile: PF00743
Flavin-binding monooxygenase-like
Length = 465
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 173 KEYNGSRSSPEEPRNVRHQEILQYRERYPSRRRSLVDDARFETLVVKQTKQSVLEEARAR 352
+ ++GSR P H E+L Y + ++ + + RFET VVK + + E R +
Sbjct: 97 RPHDGSRDPRRHPA---HTEVLAYLRDF-AKEFDIEEMVRFETEVVKAEQVAAEGEERGK 152
Query: 353 ANDSGLESDFIQDGVH 400
SD + D ++
Sbjct: 153 WRVESRSSDGVVDEIY 168
>At4g20240.1 68417.m02957 cytochrome P450, putative similar to
|C71R_ARATH Cytochrome P450 71A27 (SP:O65438)
[Arabidopsis thaliana]
Length = 865
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 231 KSYSIENGTHLAVVPWLMTPASKHW*SN----KPSRAYLKRLAPEPMTLAWNLISSKMEC 398
K Y I GTH+ + W + W + +P R + +RL P + ++L+ SK+
Sbjct: 378 KGYDISAGTHVIINAWALQRNPAIWGLDANEYRPERHFGRRLCP---GIGFSLVLSKLAL 434
Query: 399 ILVTVIILQPLKMGP 443
+ LK+GP
Sbjct: 435 ANLVKRFNWRLKVGP 449
>At3g11110.1 68416.m01345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 158
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 350 GREPLQVRSAWFV*LPVFRSGRHQPRNDGEMGTVLDTVGFLDGEHFAVLLGCCDC-HC 180
G +P ++RS LPV R + + E + GF +GE VL C C HC
Sbjct: 80 GLDPAEIRS-----LPVVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHC 132
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 164 EEDKEYNGSRSSPEEPRNVRHQEILQYRERYPSRRRSLVDDARFETLVVKQTKQSVLEEA 343
EE++ R+ +E R +E + RER R R D E ++ ++ K+ E
Sbjct: 357 EEERRREDQRARDKEREREREREHDRERERQRERERQRARDRERERILERREKERQGERE 416
Query: 344 RARANDSGLESD 379
R R ++ D
Sbjct: 417 RERKRALEIKRD 428
>At1g16460.2 68414.m01969 mercaptopyruvate sulfurtransferase (MST2)
(RDH2) identical to mercaptopyruvate sulfurtransferase
GI:6009983 and thiosulfate sulfurtransferase GI:5817004
from [Arabidopsis thaliana]; contains PF|00581
Rhodanese-like domain
Length = 342
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 726 IEWDSSDLGRASLKVLNASFIIVDGFQNACEGSHSIAHM 610
++W S+LG A +KVL+AS+ + +N + + +AH+
Sbjct: 48 VDWLHSNLGDADIKVLDASWYMAHEQRNPIQ-EYQVAHI 85
>At1g16460.1 68414.m01968 mercaptopyruvate sulfurtransferase (MST2)
(RDH2) identical to mercaptopyruvate sulfurtransferase
GI:6009983 and thiosulfate sulfurtransferase GI:5817004
from [Arabidopsis thaliana]; contains PF|00581
Rhodanese-like domain
Length = 318
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 726 IEWDSSDLGRASLKVLNASFIIVDGFQNACEGSHSIAHM 610
++W S+LG A +KVL+AS+ + +N + + +AH+
Sbjct: 24 VDWLHSNLGDADIKVLDASWYMAHEQRNPIQ-EYQVAHI 61
>At3g58890.1 68416.m06563 syntaxin-related family protein contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to proteins
At3g59270,At1g56610, At3g54160, At1g47920 (syntaxin
SYP81),, At5g41830, At3g44180, At1g48390 [Arabidopsis
thaliana]
Length = 293
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 149 WDLKGLNVRFTARLASLCLRELLVSTTGLCLSACDSSCRITIAN*TLDC 3
W + +R L +L L L+ TG C +ACD R I + L C
Sbjct: 179 WQAMPVLLRNCPHLETLVLEGLIHYVTGECGNACDCKSREGIVSSLLSC 227
>At2g14140.1 68415.m01575 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 847
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Frame = +2
Query: 170 DKEYNGSRSSPEEPRNVRHQEILQYRERYPSRRRSL--VDDARFETLVVKQTKQSVLEEA 343
D+E G EE + +E ++YR + ++ + D E KQ ++ EE
Sbjct: 473 DEEMEGEEEKQEEEGKEKEEEKVEYRGDEETEKQEIPKQGDEEMEGEEEKQEEEGKEEEE 532
Query: 344 R--ARANDSGLESDFI-QDGVHIGNGDNSPTVEDGTQQDETK 460
D G E I + G G+ E+G +++E K
Sbjct: 533 EKVEYRGDEGTEKQEIPKQGDEEMEGEEEKQEEEGKEEEEEK 574
>At1g15420.1 68414.m01850 expressed protein
Length = 278
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 311 KQTKQSVLEEARARANDSGLESDFIQDGVHIGNGDNSPTVEDGTQQDETKNG 466
K K++ E DSGL+ D +DGV + + N PT+ D + + NG
Sbjct: 31 KSKKRAEPEPDIPSTRDSGLDED--RDGVLVDDTLNEPTIGDKLESLDLLNG 80
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 427 GWRIITVTNMHSILDEIRFQARVIGSGAS 341
G + + VT + + DE F RVIGSG S
Sbjct: 96 GLKNVGVTTVFDVHDEAEFLIRVIGSGCS 124
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 311 KQTKQSVLEEARARANDSGLESDFIQDGVHIGNGDNSPTVEDGTQQDE 454
K+T+++V + +A N+SG + DF++ G+ D E + DE
Sbjct: 161 KETRKAVTDAWKAEGNESGEDDDFLRVVEKEGDDDVEVDEELAKKMDE 208
>At2g18890.1 68415.m02204 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 392
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 302 VFRSGRHQPRNDGEMGTVLDTVGFLDGEHFAVLLGCC 192
+ R GR R + E + T+G + + LLGCC
Sbjct: 99 ITRGGRDDERREKEFLMEIGTIGHVSHPNVLSLLGCC 135
>At1g58170.1 68414.m06599 disease resistance-responsive
protein-related / dirigent protein-related similar to
dirigent protein [Thuja plicata] gi|6694699|gb|AAF25360;
similar to pathogenesis-related protein [Pisum sativum]
gi|4585273|gb|AAD25355
Length = 185
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 454 FILLGPIFNGWRIITVTNMHSILDEIRFQARVIGSGASLFKYA 326
F +L +NG ITV +S+ D++R + VIG G+ LF++A
Sbjct: 117 FAILDGKYNG-STITVLGRNSVFDKVR-EMPVIG-GSGLFRFA 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,488,035
Number of Sequences: 28952
Number of extensions: 315556
Number of successful extensions: 875
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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