Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30292
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.65 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.5  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   4.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 598 PTHADSQEVLPPVKIYINIFLFYLS 524
           P+ +D++ +LP  + YIN +LF LS
Sbjct: 27  PSLSDTRPMLPYPQNYINSYLFSLS 51


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 689 LRSQYSILAAPPFKPKRITASR*K*AGRGNTYTCGLTRGPTTSKN 555
           L S  S+  +PP KP   TAS+   +   +T +   T    T+ N
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNN 187


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 689 LRSQYSILAAPPFKPKRITASR*K*AGRGNTYTCGLTRGPTTSKN 555
           L S  S+  +PP KP   TAS+   +   +T +   T    T+ N
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNN 187


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 689 LRSQYSILAAPPFKPKRITASR*K*AGRGNTYTCGLTRGPTTSKN 555
           L S  S+  +PP KP   TAS+   +   +T +   T    T+ N
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNN 187


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 689 LRSQYSILAAPPFKPKRITASR*K*AGRGNTYTCGLTRGPTTSKN 555
           L S  S+  +PP KP   TAS+   +   +T +   T    T+ N
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNN 187


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 689 LRSQYSILAAPPFKPKRITASR*K*AGRGNTYTCGLTRGPTTSKN 555
           L S  S+  +PP KP   TAS+   +   +T +   T    T+ N
Sbjct: 99  LTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNN 143


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 689 LRSQYSILAAPPFKPKRITASR*K*AGRGNTYTCGLTRGPTTSKN 555
           L S  S+  +PP KP   TAS+   +   +T +   T    T+ N
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNN 187


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 689 LRSQYSILAAPPFKPKRITASR*K*AGRGNTYTCGLTRGPTTSKN 555
           L S  S+  +PP KP   TAS+   +   +T +   T    T+ N
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNN 187


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 649 LKGGAASILYCDLRTHISRWVGT 717
           L   A  I+YC   TH  R +G+
Sbjct: 298 LNSAANPIIYCLFSTHFCRTLGS 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,200
Number of Sequences: 336
Number of extensions: 3425
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)