Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30292
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0550 + 24879074-24881290 30 2.3
05_04_0384 - 20809397-20811547 29 3.0
04_04_0523 - 25900802-25902548,25902640-25903037 29 3.0
04_04_0521 - 25880616-25882362,25883036-25883412 29 3.0
02_05_0019 - 25025218-25026964,25027084-25027478 29 3.0
02_05_0018 - 25011623-25013764 29 3.0
02_05_0016 - 25004075-25005821,25006394-25006527 29 3.0
02_05_0015 - 24992253-24993993,24995331-24995695 29 3.0
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 29 4.0
11_01_0655 + 5294905-5296083 28 7.0
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 28 7.0
11_06_0443 - 23631407-23631586,23631736-23631848,23632156-236322... 28 9.2
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 28 9.2
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 28 9.2
>11_06_0550 + 24879074-24881290
Length = 738
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -3
Query: 583 SQEVLPPVKIYINIFLFYLSRIEKSWAT*CLADTGPVRLDNVKSLNPFLDDKLTVAINKI 404
S V P KI + LS ++ SW + L D G +L ++ L +DDK ++ N +
Sbjct: 248 SSSVQIPHKIKKMSSMEVLSNVKASWTSRELKDIG--KLWQLRKLGVVIDDKDSILKNLL 305
Query: 403 VGIIILCHAI 374
I LC +
Sbjct: 306 TAISDLCECL 315
>05_04_0384 - 20809397-20811547
Length = 716
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
G PE DHL HK H PG + +
Sbjct: 296 GKPEYTDHLTHKLKHHPGQIEA 317
>04_04_0523 - 25900802-25902548,25902640-25903037
Length = 714
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
G PE DHL HK H PG + +
Sbjct: 294 GKPEYTDHLTHKLKHHPGQIEA 315
>04_04_0521 - 25880616-25882362,25883036-25883412
Length = 707
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
G PE DHL HK H PG + +
Sbjct: 287 GKPEYTDHLTHKLKHHPGSIEA 308
>02_05_0019 - 25025218-25026964,25027084-25027478
Length = 713
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
G PE DHL HK H PG + +
Sbjct: 293 GKPEYTDHLTHKLKHHPGQIEA 314
>02_05_0018 - 25011623-25013764
Length = 713
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
G PE DHL HK H PG + +
Sbjct: 293 GKPEYTDHLTHKLKHHPGQIEA 314
>02_05_0016 - 25004075-25005821,25006394-25006527
Length = 626
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
G PE DHL HK H PG + +
Sbjct: 206 GKPEYTDHLTHKLKHHPGQIEA 227
>02_05_0015 - 24992253-24993993,24995331-24995695
Length = 701
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
G PE DHL HK H PG + +
Sbjct: 283 GKPEYTDHLTHKLKHHPGSIEA 304
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 703 WRYEF*GHNIVYWLPHPSNRNALLLHGRNRQGAVIPTHADSQEVLPPVKIYIN 545
WR E+ +++ + H N L GR+ G V HA + V P++IY+N
Sbjct: 74 WRKEY---SVMPQVYHERRENMERLRGRHLLG-VSSWHASQKNVKKPIRIYLN 122
>11_01_0655 + 5294905-5296083
Length = 392
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 634 VMRFGLKGGAASILYCDLRTHISRWVG 714
V RF L GGA + CD+ + W+G
Sbjct: 135 VARFLLAGGAMGLRKCDIAPRLEFWIG 161
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 487 DTGPVRLDNVKSLNPFLDDKLTVAI 413
DT P L ++KS + FLDD LT I
Sbjct: 494 DTAPTFLHDLKSSDVFLDDNLTAKI 518
>11_06_0443 -
23631407-23631586,23631736-23631848,23632156-23632218,
23632322-23632613
Length = 215
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 664 LPHPSNRNALLLHGRNRQGAVIPTHADSQEVLPPVKIYINIFLFYLSRIEK 512
+ H SN+ R IP+ +D+ V P +K YI+I +L R K
Sbjct: 91 ISHTSNKETSS-DSRTESMTDIPSSSDNSAVTPDIKNYISIIGQFLQRSSK 140
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 508 KTFQSVTNKIKKYLYKFLLVVGPLVSPHV*VLPRPAYFYREAV--MRFGLKGGAASIL 675
K +S+ +KK L++ L V+ SP VLP P+ F + ++ ++ G + G + +L
Sbjct: 531 KDLKSLVLILKKALWELLWVIPSHASPAKKVLPNPSGFKKLSIENVKIGARIGLSELL 588
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 505 PKTFQSVTNKIKKYLYKFLLVVGPLVSPHV*VLPRPAYFYR 627
P F +N + + K +L VGP+++P + L P F+R
Sbjct: 254 PAGFHEDSNVVFSMVEKLILFVGPVLAPFIPGLYIPTRFFR 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,865
Number of Sequences: 37544
Number of extensions: 316509
Number of successful extensions: 575
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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