Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30292
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  28   9.4  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   28   9.4  
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 683 TLELISPG-GWAHLCRRWSMSSG*P 754
           +L+L+  G  W+H+CR+ S  SG P
Sbjct: 17  SLQLVGRGKNWSHICRQMSSQSGRP 41


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 695 ISPGGWAHLCRRWSMSSG 748
           I+ G W HLC RW    G
Sbjct: 412 INTGSWRHLCLRWKSRGG 429


>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1473

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 741  LIDHL-RHKCAHPPGDMSSKVTI*YTGCPTLQTETHYCFTVE 619
            L++H+ RH    P  D+S   T  Y   P L  + ++C T+E
Sbjct: 1207 LLEHIVRHLFISPGRDLSIVATTHYLTRPPLVNDDYFCETIE 1248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,792,036
Number of Sequences: 59808
Number of extensions: 361693
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)