Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30292
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04230.1 68418.m00412 phenylalanine ammonia-lyase 3 (PAL3) ne...    30   1.9  
At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative s...    30   1.9  
At3g53260.1 68416.m05870 phenylalanine ammonia-lyase 2 (PAL2) ne...    29   4.4  
At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1) ne...    29   4.4  

>At5g04230.1 68418.m00412 phenylalanine ammonia-lyase 3 (PAL3)
           nearly identical to SP|P45725
          Length = 698

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
           G PE  DHL HK  H PG + +
Sbjct: 284 GKPEFTDHLTHKLKHHPGQIEA 305


>At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative
           similar to phenylalanine ammonia-lyase GB:S48726
           [Petroselinum crispum]
          Length = 707

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
           G PE  DHL HK  H PG + +
Sbjct: 287 GKPEFTDHLTHKLKHHPGQIEA 308


>At3g53260.1 68416.m05870 phenylalanine ammonia-lyase 2 (PAL2)
           nearly identical to SP|P45724
          Length = 717

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
           G PE  DHL H+  H PG + +
Sbjct: 297 GKPEFTDHLTHRLKHHPGQIEA 318


>At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1)
           nearly identical to SP|P35510
          Length = 725

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 753 GYPELIDHLRHKCAHPPGDMSS 688
           G PE  DHL H+  H PG + +
Sbjct: 305 GKPEFTDHLTHRLKHHPGQIEA 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,288
Number of Sequences: 28952
Number of extensions: 262318
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)