Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30291
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    29   0.50 
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    27   2.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   6.2  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   8.2  

>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 579 QSQPKPGEPEPAIIEYVTQQHKLFIALSER 668
           ++ P+   PE A+++ + ++HKLF+ALS R
Sbjct: 374 ETTPQNNSPE-ALLKTIKEEHKLFMALSNR 402


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 194 WLTRPIIASWLPNCTRTANVRGPSVLRSDSRFGNAHATNRCQSWRDW 334
           WL       WL + T  +  RG     S  R G       C+SW DW
Sbjct: 19  WLLVVSFFEWLFSATSISQQRG-----SGPRKGKVVMNKDCRSWEDW 60


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 291 PNLESERRTDGPLTFAVRVQL 229
           PNL    R D PL F +RVQL
Sbjct: 320 PNLPYYDRPDSPLPFEIRVQL 340


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 274 TKNGWTPNICRSCTVGQPRCND 209
           ++NG+   +CR C  G+P  ND
Sbjct: 184 SENGFWCRVCRECYEGRPGYND 205


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 30  PKPQSGDYWNLCSDGVR-SRHVSQGLRDD 113
           P   SG YW++ S GVR SR VS+ +  +
Sbjct: 752 PDSLSGLYWSVKSAGVRASRRVSRNIEGE 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,232
Number of Sequences: 5004
Number of extensions: 60026
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)