Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30291
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 120 9e-28
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 91 6e-19
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 86 2e-17
04_04_0440 - 25219961-25221529 30 1.6
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 30 1.6
09_04_0195 - 15509412-15509580,15510136-15510467,15510494-155109... 30 2.1
08_01_0358 - 3145034-3145233,3145305-3145464 30 2.1
02_02_0110 - 6848160-6848264,6849442-6849585 29 4.9
12_02_1186 + 26791153-26791666,26791906-26792025,26792303-26792409 28 6.4
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 6.4
01_06_1806 + 40012952-40016836 28 8.5
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 120 bits (290), Expect = 9e-28
Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 4/147 (2%)
Frame = +3
Query: 234 VHERQMLGVHPFFVQIRDSETHMPLTGVKVGEIGPKLG---FNTANNGFLGFNNFRIPRM 404
+ E + G+H F VQ+R E H PL GV +G+IG K G +N+ +NG L F++ RIPR
Sbjct: 198 ITEGKDYGIHGFIVQLRSLEDHSPLPGVTLGDIGGKFGSGAYNSMDNGVLRFDHVRIPRD 257
Query: 405 NMLMKNAQVLKDGTYVKAKSDK-LTYGTMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQ 581
MLM+ +QV K+G YV + K L YGTMVFVR + + A+ IAVRY+A+R Q
Sbjct: 258 QMLMRLSQVTKEGKYVHSDVPKQLLYGTMVFVRQTIVADASKALSRATCIAVRYSAIRKQ 317
Query: 582 SQPKPGEPEPAIIEYVTQQHKLFIALS 662
P+ G PE ++ Y TQQ +LF L+
Sbjct: 318 FGPQTGGPETQVLNYKTQQSRLFPLLA 344
Score = 107 bits (257), Expect = 9e-24
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +1
Query: 46 EIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCIVV 225
+IIG YAQTELGHG+ ++GLETTAT+DPKT+EFV++SPTLT+ KWWPGGL + H +V
Sbjct: 135 QIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKASTHAVVY 194
Query: 226 AQLYTNGK 249
A+L T GK
Sbjct: 195 ARLITEGK 202
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 91.5 bits (217), Expect = 6e-19
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 10/155 (6%)
Frame = +3
Query: 252 LGVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQV 431
+G+H F V IRD +T+ L G+++ + G K+G N +NG L F + RIPR N+L + V
Sbjct: 260 MGIHAFIVPIRDLDTNAVLPGIEINDCGHKIGLNGVDNGALRFRSVRIPRDNLLNRFGDV 319
Query: 432 LKDGTYVKA-----KSDKLTYGTMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKP 596
+DG Y + K T G +V RV + + + + TIAVRYA +R Q P P
Sbjct: 320 SRDGKYTSSLPTINKRFAATLGELVGGRVGIAYSSVGILKVSVTIAVRYALLRQQFGP-P 378
Query: 597 GEPEPAIIEYVTQQHKLFIALSER-----ATRYPV 686
+PE ++++Y + QHKL L+ ATRY V
Sbjct: 379 KKPEISVLDYQSHQHKLMPMLASSYAFHFATRYLV 413
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = +1
Query: 40 NLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCI 219
NL+ G +A TEL HG+ ++ L+TTAT+DP T+EF++N+P A KWW G A
Sbjct: 182 NLDYPGCFAMTELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFAT 241
Query: 220 VVAQL 234
V A+L
Sbjct: 242 VFARL 246
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +1
Query: 40 NLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCI 219
N I G ++ TELGHG+ +RG+ET ATYD KT EFV+N+P +A K+W GG A+ A H I
Sbjct: 187 NYVIKGCFSMTELGHGSNVRGIETVATYDIKTREFVINTPCESAQKYWIGGAANHATHTI 246
Query: 220 VVAQLYTNGK 249
V AQL+ NG+
Sbjct: 247 VFAQLHINGR 256
Score = 73.7 bits (173), Expect = 1e-13
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
Frame = +3
Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQVL 434
GVH F QIRD ++ + +++ + G K+G N +NG + FNN R+PR N+L A VL
Sbjct: 259 GVHAFVAQIRDEHENV-MPNIQIADCGHKIGLNGVDNGRIWFNNIRVPRENLLNLVADVL 317
Query: 435 KDGTYVKAKSDK-------LTYGTMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPK 593
DG YV D L+ T+ V + + + + A IAVRYA R
Sbjct: 318 PDGQYVSTIDDPDQRFAAFLSPLTLGRVNIAVNAVYISKVGVA--IAVRYALSRRAFSVT 375
Query: 594 PGEPEPAIIEYVTQQHKLFIALSE 665
P PE +++Y + Q +L L++
Sbjct: 376 PDGPEMLLLDYPSHQRRLLPLLAK 399
>04_04_0440 - 25219961-25221529
Length = 522
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 192 IGSHG-QSLHRGCPTVHERQMLGVHPFFVQIR 284
IG HG ++ RGCP + E ++GV+P +R
Sbjct: 330 IGDHGLMAVARGCPDLQELVLIGVNPTVQSLR 361
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 331 ISPTLTPVSGMCVSESRI*TKNGWTPNICRSCTVGQP 221
+SP LTPVSG V S+ TKN + VG P
Sbjct: 122 VSPMLTPVSGKAVKTSKSKTKNNKAGPQTPTSNVGSP 158
>09_04_0195 -
15509412-15509580,15510136-15510467,15510494-15510900,
15511467-15511581,15512711-15514044,15514558-15514819
Length = 872
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 330 IGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQVLKDGTYVKAKS 464
IGP + TA G+ G +NF+I + ++ VLK TY KS
Sbjct: 695 IGPI--YKTAGFGYFGQSNFKISFLLDCLRMQNVLKCSTYANTKS 737
>08_01_0358 - 3145034-3145233,3145305-3145464
Length = 119
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 522 RTSCRGASTIAVRYAAVRHQSQPKPGEPEPAI-IEYV 629
+T RGAS++ V A++R Q QP G +P+ ++YV
Sbjct: 5 QTRRRGASSMGVAMASIRPQQQPDGGRLKPSSHLQYV 41
>02_02_0110 - 6848160-6848264,6849442-6849585
Length = 82
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 156 SNSNGVQMVARWIGSHGQSLHRGCPTVHERQMLGVHPFFVQIRDSETHMPLTGVKVGEIG 335
+ + V + W G R CP + G +P ++ +E P VGE+G
Sbjct: 4 ATAEAVAAASAWRQGRGGCRCRACPAGVVHNLAGCYPPPELVQTAEKRTPTRAGVVGELG 63
Query: 336 P 338
P
Sbjct: 64 P 64
>12_02_1186 + 26791153-26791666,26791906-26792025,26792303-26792409
Length = 246
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 483 TMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKPGEPEPAIIEY 626
T V +L W GA+ + V Y + QP P P PA Y
Sbjct: 110 TTVLFTLLSIIVWAVFLYGAAKLCVNYLVPLFRQQPPPSLPSPASHTY 157
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 194 NPPGHHLYAVRVGLFSTNSSVLGSYVAVV 108
NPP + LYAV V + + N+S G Y++ V
Sbjct: 627 NPPLYFLYAVVVHVDTENASFSGHYISYV 655
>01_06_1806 + 40012952-40016836
Length = 1294
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 491 HHGTISQLVAFRFHVCSVLQNLSVLHQHIH---PGY 393
HH ++ + F C+ L L++L HIH PGY
Sbjct: 455 HHNNLTGTIDEAFKGCTNLTELNLLDNHIHGEVPGY 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,248
Number of Sequences: 37544
Number of extensions: 442248
Number of successful extensions: 1206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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