Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30291
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   2e-25
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)        112   2e-25
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)         75   8e-14
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   8e-11
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)                  29   5.0  
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_6786| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           28   8.7  
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     28   8.7  
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)                      28   8.7  

>SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score =  113 bits (271), Expect = 2e-25
 Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 5/145 (3%)
 Frame = +3

Query: 243 RQMLGVHPFFVQIRDSETHMPLTGVKVGEIGPKLGF--NTANNGFLGFNNFRIPRMNMLM 416
           ++  G+  F +QIRD  T  P  GVK+G+IGPK  F  N+  NG+L  ++ R+PR +ML 
Sbjct: 185 KKSYGIQFFMLQIRDPVTRRPTPGVKLGDIGPKGSFLINSQENGYLLLDHVRVPRDHMLS 244

Query: 417 KNAQVLKDGTYVKAKS---DKLTYGTMVFVRVLM*PTWRTSCRGASTIAVRYAAVRHQSQ 587
             A+V+ DGT+VK+ +   DK+ Y  M++VR  +          A TIAVRY+AVR QS+
Sbjct: 245 ALAEVMADGTFVKSSNEDADKVLYSIMLYVRSTIPQDAYFIASRAITIAVRYSAVRRQSE 304

Query: 588 PKPGEPEPAIIEYVTQQHKLFIALS 662
            KPG+ E  I++Y TQQ KL  +L+
Sbjct: 305 LKPGQGELQILDYSTQQDKLLPSLA 329



 Score = 28.7 bits (61), Expect(2) = 0.011
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +1

Query: 46  EIIGTYAQTELGH 84
           +I+GTYAQTE+GH
Sbjct: 155 QILGTYAQTEMGH 167



 Score = 27.9 bits (59), Expect(2) = 0.011
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 187 GGLAHTANHCIVVAQLYTNGKC*G 258
           G + HT +H IV+AQLY   K  G
Sbjct: 166 GHVGHTCSHAIVLAQLYIGKKSYG 189


>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/68 (69%), Positives = 60/68 (88%)
 Frame = +1

Query: 46  EIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCIVV 225
           +I+GT+AQTELGHGTF+RGLETTATYD +T++FVL+SP+LTA KWWPG L H+ N+CIVV
Sbjct: 166 QILGTFAQTELGHGTFVRGLETTATYDKQTQQFVLHSPSLTASKWWPGNLGHSTNYCIVV 225

Query: 226 AQLYTNGK 249
           A+L  + K
Sbjct: 226 ARLIIDDK 233



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
 Frame = +3

Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLG--FNTANNGFLGFNNFRIPRMNMLMKNAQ 428
           G+H F +Q RD +TH PL GV +GEIGPK    +N  +NGFL  ++ R+PR  MLM  AQ
Sbjct: 236 GLHYFLLQTRDLKTHQPLPGVTIGEIGPKTSRYYNVNDNGFLLLDHVRVPREQMLMGLAQ 295


>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
          Length = 647

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 34/70 (48%), Positives = 48/70 (68%)
 Frame = +1

Query: 40  NLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCI 219
           +LE +G +  TELG+G     +ETTATYD +T+EF++N+P+  A K+W    A  A+H +
Sbjct: 166 SLEDVGCFGLTELGYGNNAVQMETTATYDNETQEFIVNTPSTLAQKYWITNGACDAHHIV 225

Query: 220 VVAQLYTNGK 249
           V AQLY NGK
Sbjct: 226 VFAQLYVNGK 235



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
 Frame = +3

Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQVL 434
           G+H   V IRD      + G  + ++GPK+G N  +N    F+N R+PR N+L   + V 
Sbjct: 238 GIHGVLVPIRDKNLK-EMPGSSIHDMGPKMGLNGVDNAKFIFDNVRVPRENLLNLYSDVD 296

Query: 435 KDGTYV-----KAKSDKLTYGTMVFV-RVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKP 596
            DG Y        +   LT    +   R+ +    +   +   TIA RY+A R    P+ 
Sbjct: 297 ADGNYTTVVDGNIRKRFLTVADQLLSGRLCIASMSQGVSKACITIATRYSATRLTVGPE- 355

Query: 597 GEPEPAIIEYVTQQHKLFIALSE 665
           G+ +  I++Y  QQ  L   L++
Sbjct: 356 GKSDTPILKYQLQQLALMPLLAK 378


>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 30/69 (43%), Positives = 45/69 (65%)
 Frame = +1

Query: 40  NLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCI 219
           +L+ +G +  TELG+G     +ETTA YD +T+EFV+N+P+  A K+W    A  A+H +
Sbjct: 187 SLQEVGCFGLTELGYGNNAVQMETTAVYDKETKEFVVNTPSPLAQKYWITNGACHAHHIV 246

Query: 220 VVAQLYTNG 246
           V AQ Y +G
Sbjct: 247 VFAQTYVDG 255



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
 Frame = +3

Query: 255 GVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNMLMKNAQVL 434
           G+H   V IRD + H+   GV++ ++G K+G N  +N    F+N  +PR N+L   ++V 
Sbjct: 259 GIHGVLVPIRDHDLHVK-PGVRIDDMGHKMGLNGVDNAKFYFDNVHVPRENLLNVYSEVE 317

Query: 435 KDGTYVKA-----KSDKLTYGTMVFV-RVLM*PTWRTSCRGASTIAVRYAAVRHQSQPKP 596
           +DGTY  +     +   LT    +   R+ +    + + +   T+A+RY+A R    P  
Sbjct: 318 EDGTYTTSIEGSIRKRFLTVADQLLSGRLCIASMSQGASKAVCTVAIRYSATRLAVGP-D 376

Query: 597 GEPEPAIIEYVTQQHKLFIALS 662
           G  +  I++Y  QQ  L   L+
Sbjct: 377 GMSDTPILKYQLQQRALMPLLA 398


>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 303 PLTGVKVGEIGPKLGFNTANNGFLGFNNFRIPRMNML 413
           P  G+ +G    KLG    +  +L F + RIP+ N+L
Sbjct: 204 PTPGLTLGNKEDKLGIRATSTCYLVFEDCRIPKENLL 240


>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
          Length = 645

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
 Frame = +3

Query: 15  VAEWLPKPQSGDY-----WNLCSDGVRSRHVSQGLRDDCNIRP*DRGVRTEQSNSNGVQM 179
           V + LP+P+ G +     W +C    +    +    DD  + P       E+   + VQ 
Sbjct: 418 VPKSLPQPEDGFFPFVKRWPVCMQASKDDKSNYNPWDDLVLTPPTIRQGKEKVQHDYVQ- 476

Query: 180 VARWIGSHGQSLHRGCPTVHERQMLGVHPFFVQIRDSETHMPLTGVK 320
             +W+ S  ++    C T+H  +     P   QI+D E   P   VK
Sbjct: 477 --KWLESVERASKPVCRTMHCNECAPSQPPLCQIKDCEVCTPRQWVK 521


>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 561 YAAVRHQSQPKPGEPEPAIIEYVTQQHKLFIALS 662
           Y+AVR Q  P PG+ E  ++EY  QQ +L   L+
Sbjct: 2   YSAVRKQFGP-PGKDEIPVLEYQMQQWRLIPLLA 34


>SB_6786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 261 HPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFL 374
           +PFFV++ +  + +P    K+G IG   G    N  FL
Sbjct: 9   YPFFVEVFEFRSILPFCNNKIGPIGRPPGIIECNIEFL 46


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 244  RSCTVGQPRCNDWPCEPIHLATICTPLELDCSVRTPRS*G 125
            RSCT  +PRC    C  ++L T  T     C     RS G
Sbjct: 1305 RSCTNPKPRCGGKDCTALNLPTTETQACYSCDESPIRSYG 1344


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 401  DEYVDEERSGSEGRNIRESEKRQAD 475
            DE VDEE    EG  + E E  +AD
Sbjct: 1798 DEEVDEEMDDEEGEEMMEDEDEEAD 1822


>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
          Length = 249

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 527 RTPCRSHEDPHEHHGT--ISQLVAFRFHVCSVLQNLSVLHQHIHP 399
           +TP R H+ P  HH T       + + H  S+ Q+ + L QH  P
Sbjct: 78  KTPLRQHKTPLRHHKTPLRQHKTSLQQHKISLQQHKTRLRQHKTP 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,400,643
Number of Sequences: 59808
Number of extensions: 495397
Number of successful extensions: 1395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)