Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30291
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   3.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 488 HGTISQLVAFRFHVCSVLQNLSVLHQHIHPGYTEVVETKE 369
           H ++  ++ + F  C+ +   SV  + +H G  E V TKE
Sbjct: 107 HESLKNVLLWDFQECTFI---SVNGKEVHSGNIEAVTTKE 143


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 567 AVRHQSQPKPGEP-EPAIIEYVTQQHKLFIALSERATRYPVYPEF 698
           +V+ QSQ + G+P +P+++      H    A S++   YP +P +
Sbjct: 40  SVQQQSQ-QAGDPCDPSLLRQGVPGHHYGAAGSQQDMPYPRFPPY 83


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 564 AAVRHQSQPKPGEPEPAIIEYVTQQHKLFIALSERATR 677
           A V H  Q    E    ++E+ ++  +LF++L   ATR
Sbjct: 109 AMVTHLPQTLTSENVEILLEHSSKLVELFLSLGADATR 146


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 377 FQQLPYTQDEYVDEERSGSEGRNIRESEKRQAD 475
           +QQ PY   E  DEE+   E  N +   + Q D
Sbjct: 83  YQQSPYLMYENPDEEKRYQEHPNGKILRELQTD 115


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 380 QQLPYTQDEYVDEERSGSEGRN 445
           QQL  TQ +Y+ ++  G +G N
Sbjct: 188 QQLQITQSQYLLQQGLGLQGHN 209


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +3

Query: 222 GCPTVHERQMLGVHPFFVQIRDSETHMPLTGVKVGEIGPKL 344
           G P+++      + P  + I    T+    G   GEI P +
Sbjct: 41  GVPSIYLTYAKNILPNNISIAGQNTYKVAKGAFTGEISPAM 81


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = -3

Query: 479 ISQLVAFRFHVCSVLQNLSVLHQHIHPGYTEVVETKETIIGRIKAKLRSNLANFD 315
           + + +A+R     + Q ++   +H + G       +E I+G +  KLR ++ N++
Sbjct: 395 VEEYMAYRKLPREMRQRITEYFEHRYQGK---FFDEELILGELSEKLREDVINYN 446


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = -3

Query: 479 ISQLVAFRFHVCSVLQNLSVLHQHIHPGYTEVVETKETIIGRIKAKLRSNLANFD 315
           + + +A+R     + Q ++   +H + G       +E I+G +  KLR ++ N++
Sbjct: 363 VEEYMAYRKLPREMRQRITEYFEHRYQGK---FFDEELILGELSEKLREDVINYN 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,396
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)